SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
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Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

RefSeq ID:	NM_130393
Gene Symbol:	PTPRD
Description:	Homo sapiens protein tyrosine phosphatase, receptor type, D (PTPRD), transcript variant 5, mRNA.
Gene Location:	chr9(-):8314245-8733946
Browse Associations

Somatic mutations that impact miRNA target sites

Mutation			Mutation ID		Sample Name		Cancer Type
chr9:g.8314249T>C			COSN9318732		1953_T		[lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Mutation			Mutation ID		Sample Name		Cancer Type
chr9:g.8314292T>C			COSN6396121		RK077_C01		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-4633-3p	tgacacaAGCTCCatttgt	0	AGGAGCUA	m6b	Created	no TS	-0.219000	No effect

Mutation			Mutation ID		Sample Name		Cancer Type
chr9:g.8314915G>T			COSN9318733		381_T		[lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Mutation			Mutation ID		Sample Name		Cancer Type
chr9:g.8314988A>C			COSN14949881		CHC433T		[liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-5011-5p	aaaatcaaaATATATAaaa	19	UAUAUAUA	m7a	(m7a->m6a)	1.598000	1.530000	No effect

Mutation			Mutation ID		Sample Name		Cancer Type
chr9:g.8315366G>T			COSN9318734		2275_T		[lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-3926	gaatgaTTGGCCAatgagc	0	UGGCCAAA	m7a	Disrupted	-0.042000	no TS	0.410000
hsa-miR-4435	gaatgatTGGCCAatgagc	5	AUGGCCAG	m6b	Disrupted	-0.041000	no TS	1.410000
hsa-miR-4520b-3p	gaatgatTGTCCAAtgagc	0	UUUGGACA	m7b	Created	no TS	-0.052000	No effect
hsa-miR-548s	gaatgaTTGGCCAatgagc	0	AUGGCCAA	m7b	Disrupted	-0.110000	no TS	No effect

Mutation			Mutation ID		Sample Name		Cancer Type
chr9:g.8315880A>C			COSN8583423		tumor_4135099		[haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Mutation			Mutation ID		Sample Name		Cancer Type
chr9:g.8316748C>A			COSN9318735		J30_T		[lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-2681-3p	cctcaccCCATGATttcct	10	UAUCAUGG	m7b	Created	-0.119000	-0.134000	-0.010000

Mutation			Mutation ID		Sample Name		Cancer Type
chr9:g.8317079G>T			COSN9524494		AOCS-155-3-5		[ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-1225-5p	ggtgagaaaGTACCCAttc	0	GUGGGUAC	m7b	(m7b->m6b)	-0.261000	-0.035000	No effect
hsa-miR-555	ggtgagaaaTTACCCattc	0	AGGGUAAG	m6b	Created	-0.078000	-0.188000	-0.070000

Mutation			Mutation ID		Sample Name		Cancer Type
chr9:g.8317418A>T			COSN4890571		tumor_4104893		[haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-361-3p	taacattttTGGGGGAaag	0	UCCCCCAG	m7a	(m6a->m7a)	no TS	-0.186000	-10.920000

Mutation			Mutation ID		Sample Name		Cancer Type
chr9:g.8317584A>G			COSN1381663		HCC66T		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-4679	gaagaaATCACAGcaaaga	10	UCUGUGAU	m7b	Disrupted	-0.205000	no TS	3.760000
hsa-miR-4679	gaagaaATCACAGcaaaga	0	UCUGUGAU	m7b	Disrupted	-0.205	no TS	3.76

Mutation			Mutation ID		Sample Name		Cancer Type
chr9:g.8317619A>G			COSN2329749		RK056_C01		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-let-7a-5p	tttacagaTACCTCAagga	20	UGAGGUAG	m7a	Disrupted	-0.190000	-0.052000	No effect
hsa-let-7b-5p	tttacagaTACCTCAagga	20	UGAGGUAG	m7a	Disrupted	-0.187000	-0.052000	No effect
hsa-let-7c	tttacagaTACCTCAagga	20	UGAGGUAG	m7a	Disrupted	-0.190000	-0.052000	No effect
hsa-let-7d-5p	tttacagaTACCTCaagga	20	AGAGGUAG	m6b	Disrupted	-0.184000	-0.052000	No effect
hsa-let-7e-5p	tttacagaTACCTCAagga	20	UGAGGUAG	m7a	Disrupted	-0.190000	-0.052000	No effect
hsa-let-7f-5p	tttacagaTACCTCAagga	20	UGAGGUAG	m7a	Disrupted	-0.190000	-0.052000	No effect
hsa-let-7g-5p	tttacagaTACCTCAagga	20	UGAGGUAG	m7a	Disrupted	-0.190000	-0.052000	No effect
hsa-let-7i-5p	tttacagaTACCTCAagga	20	UGAGGUAG	m7a	Disrupted	-0.187000	-0.052000	No effect
hsa-miR-1304-5p	tttacagatGCCTCAAgga	0	UUUGAGGC	m7b	(m6b->m7b)	-0.002000	-0.226000	No effect
hsa-miR-1827	tttacagaTGCCTCAagga	0	UGAGGCAG	m7a	Created	no TS	-0.132000	No effect
hsa-miR-202-3p	tttacagATACCTCaagga	20	AGAGGUAU	m7b	Disrupted	-0.325000	-0.007000	No effect
hsa-miR-4458	tttacagaTACCTCaagga	20	AGAGGUAG	m6b	Disrupted	-0.187000	-0.052000	No effect
hsa-miR-4500	tttacagaTACCTCAagga	20	UGAGGUAG	m7a	Disrupted	-0.222000	-0.094000	No effect
hsa-miR-98	tttacagaTACCTCAagga	20	UGAGGUAG	m7a	Disrupted	-0.190000	-0.052000	No effect
hsa-let-7a-5p	tttacagaTACCTCAagga	0	UGAGGUAG	m7a	Disrupted	-0.19	-0.052	No effect
hsa-let-7b-5p	tttacagaTACCTCAagga	0	UGAGGUAG	m7a	Disrupted	-0.187	-0.052	No effect
hsa-let-7c	tttacagaTACCTCAagga	0	UGAGGUAG	m7a	Disrupted	-0.19	-0.052	No effect
hsa-let-7d-5p	tttacagaTACCTCaagga	0	AGAGGUAG	m6b	Disrupted	-0.184	-0.052	No effect
hsa-let-7e-5p	tttacagaTACCTCAagga	0	UGAGGUAG	m7a	Disrupted	-0.19	-0.052	No effect
hsa-let-7f-5p	tttacagaTACCTCAagga	0	UGAGGUAG	m7a	Disrupted	-0.19	-0.052	No effect
hsa-let-7g-5p	tttacagaTACCTCAagga	0	UGAGGUAG	m7a	Disrupted	-0.19	-0.052	No effect
hsa-let-7i-5p	tttacagaTACCTCAagga	0	UGAGGUAG	m7a	Disrupted	-0.187	-0.052	No effect
hsa-miR-1304-5p	tttacagatGCCTCAAgga	0	UUUGAGGC	m7b	(m6b->m7b)	-0.002	-0.226	No effect
hsa-miR-1827	tttacagaTGCCTCAagga	0	UGAGGCAG	m7a	Created	no TS	-0.132	No effect
hsa-miR-202-3p	tttacagATACCTCaagga	0	AGAGGUAU	m7b	Disrupted	-0.325	-0.007	No effect
hsa-miR-4458	tttacagaTACCTCaagga	0	AGAGGUAG	m6b	Disrupted	-0.187	-0.052	No effect
hsa-miR-4500	tttacagaTACCTCAagga	0	UGAGGUAG	m7a	Disrupted	-0.222	-0.094	No effect
hsa-miR-98	tttacagaTACCTCAagga	0	UGAGGUAG	m7a	Disrupted	-0.19	-0.052	No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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