SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_130391 |
---|---|
Gene Symbol: | PTPRD |
Description: | Homo sapiens protein tyrosine phosphatase, receptor type, D (PTPRD), transcript variant 5, mRNA. |
Gene Location: | chr9(-):8314245-8733946 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.8314249T>C | COSN9318732 | 1953_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.8314292T>C | COSN6396121 | RK077_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4633-3p |
tgacacaAGCTCCatttgt |
0 | AGGAGCUA | m6b | Created | no TS | -0.219000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.8314915G>T | COSN9318733 | 381_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.8314988A>C | COSN14949881 | CHC433T | [liver][NS][carcinoma][hepatocellular_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-5011-5p |
aaaatcaaaATATATAaaa |
19 |
UAUAUAUA | m7a | (m7a->m6a) | 1.598000 | 1.530000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.8315366G>T | COSN9318734 | 2275_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3926 |
gaatgaTTGGCCAatgagc |
0 | UGGCCAAA | m7a | Disrupted | -0.042000 | no TS |
0.410000 |
|
hsa-miR-4435 |
gaatgatTGGCCAatgagc |
5 |
AUGGCCAG | m6b | Disrupted | -0.041000 | no TS |
1.410000 |
|
hsa-miR-4520b-3p |
gaatgatTGTCCAAtgagc |
0 | UUUGGACA | m7b | Created | no TS | -0.052000 | No effect | |
hsa-miR-548s |
gaatgaTTGGCCAatgagc |
0 | AUGGCCAA | m7b | Disrupted | -0.110000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.8315880A>C | COSN8583423 | tumor_4135099 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.8316748C>A | COSN9318735 | J30_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-2681-3p |
cctcaccCCATGATttcct |
10 |
UAUCAUGG | m7b | Created | -0.119000 | -0.134000 |
-0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.8317079G>T | COSN9524494 | AOCS-155-3-5 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1225-5p |
ggtgagaaaGTACCCAttc |
0 | GUGGGUAC | m7b | (m7b->m6b) | -0.261000 | -0.035000 | No effect | |
hsa-miR-555 |
ggtgagaaaTTACCCattc |
0 | AGGGUAAG | m6b | Created | -0.078000 | -0.188000 |
-0.070000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.8317418A>T | COSN4890571 | tumor_4104893 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-361-3p |
taacattttTGGGGGAaag |
0 | UCCCCCAG | m7a | (m6a->m7a) | no TS | -0.186000 |
-10.920000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.8317584A>G | COSN1381663 | HCC66T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4679 |
gaagaaATCACAGcaaaga |
10 |
UCUGUGAU | m7b | Disrupted | -0.205000 | no TS |
3.760000 |
|
hsa-miR-4679 |
gaagaaATCACAGcaaaga |
0 | UCUGUGAU | m7b | Disrupted | -0.205 | no TS |
3.76 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.8317619A>G | COSN2329749 | RK056_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-let-7a-5p |
tttacagaTACCTCAagga |
20 |
UGAGGUAG | m7a | Disrupted | -0.190000 | -0.052000 | No effect |
hsa-let-7b-5p |
tttacagaTACCTCAagga |
20 |
UGAGGUAG | m7a | Disrupted | -0.187000 | -0.052000 | No effect |
hsa-let-7c |
tttacagaTACCTCAagga |
20 |
UGAGGUAG | m7a | Disrupted | -0.190000 | -0.052000 | No effect |
hsa-let-7d-5p |
tttacagaTACCTCaagga |
20 |
AGAGGUAG | m6b | Disrupted | -0.184000 | -0.052000 | No effect |
hsa-let-7e-5p |
tttacagaTACCTCAagga |
20 |
UGAGGUAG | m7a | Disrupted | -0.190000 | -0.052000 | No effect |
hsa-let-7f-5p |
tttacagaTACCTCAagga |
20 |
UGAGGUAG | m7a | Disrupted | -0.190000 | -0.052000 | No effect |
hsa-let-7g-5p |
tttacagaTACCTCAagga |
20 |
UGAGGUAG | m7a | Disrupted | -0.190000 | -0.052000 | No effect |
hsa-let-7i-5p |
tttacagaTACCTCAagga |
20 |
UGAGGUAG | m7a | Disrupted | -0.187000 | -0.052000 | No effect |
hsa-miR-1304-5p |
tttacagatGCCTCAAgga |
0 | UUUGAGGC | m7b | (m6b->m7b) | -0.002000 | -0.226000 | No effect |
hsa-miR-1827 |
tttacagaTGCCTCAagga |
0 | UGAGGCAG | m7a | Created | no TS | -0.132000 | No effect |
hsa-miR-202-3p |
tttacagATACCTCaagga |
20 |
AGAGGUAU | m7b | Disrupted | -0.325000 | -0.007000 | No effect |
hsa-miR-4458 |
tttacagaTACCTCaagga |
20 |
AGAGGUAG | m6b | Disrupted | -0.187000 | -0.052000 | No effect |
hsa-miR-4500 |
tttacagaTACCTCAagga |
20 |
UGAGGUAG | m7a | Disrupted | -0.222000 | -0.094000 | No effect |
hsa-miR-98 |
tttacagaTACCTCAagga |
20 |
UGAGGUAG | m7a | Disrupted | -0.190000 | -0.052000 | No effect |
hsa-let-7a-5p |
tttacagaTACCTCAagga |
0 | UGAGGUAG | m7a | Disrupted | -0.19 | -0.052 | No effect |
hsa-let-7b-5p |
tttacagaTACCTCAagga |
0 | UGAGGUAG | m7a | Disrupted | -0.187 | -0.052 | No effect |
hsa-let-7c |
tttacagaTACCTCAagga |
0 | UGAGGUAG | m7a | Disrupted | -0.19 | -0.052 | No effect |
hsa-let-7d-5p |
tttacagaTACCTCaagga |
0 | AGAGGUAG | m6b | Disrupted | -0.184 | -0.052 | No effect |
hsa-let-7e-5p |
tttacagaTACCTCAagga |
0 | UGAGGUAG | m7a | Disrupted | -0.19 | -0.052 | No effect |
hsa-let-7f-5p |
tttacagaTACCTCAagga |
0 | UGAGGUAG | m7a | Disrupted | -0.19 | -0.052 | No effect |
hsa-let-7g-5p |
tttacagaTACCTCAagga |
0 | UGAGGUAG | m7a | Disrupted | -0.19 | -0.052 | No effect |
hsa-let-7i-5p |
tttacagaTACCTCAagga |
0 | UGAGGUAG | m7a | Disrupted | -0.187 | -0.052 | No effect |
hsa-miR-1304-5p |
tttacagatGCCTCAAgga |
0 | UUUGAGGC | m7b | (m6b->m7b) | -0.002 | -0.226 | No effect |
hsa-miR-1827 |
tttacagaTGCCTCAagga |
0 | UGAGGCAG | m7a | Created | no TS | -0.132 | No effect |
hsa-miR-202-3p |
tttacagATACCTCaagga |
0 | AGAGGUAU | m7b | Disrupted | -0.325 | -0.007 | No effect |
hsa-miR-4458 |
tttacagaTACCTCaagga |
0 | AGAGGUAG | m6b | Disrupted | -0.187 | -0.052 | No effect |
hsa-miR-4500 |
tttacagaTACCTCAagga |
0 | UGAGGUAG | m7a | Disrupted | -0.222 | -0.094 | No effect |
hsa-miR-98 |
tttacagaTACCTCAagga |
0 | UGAGGUAG | m7a | Disrupted | -0.19 | -0.052 | No effect |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
8314988 | rs3739579 | A | A |
hsa-miR-190a-3p hsa-miR-5011-5p |
20 20 |
atcaaaATATATA atcaaaATATATA |
Disrupted Disrupted |
N N |
-0.065 0.068 |
8315603 | rs183006249 | C | C |
hsa-let-7a-5p hsa-let-7b-5p hsa-let-7c-5p hsa-let-7d-5p hsa-let-7e-5p hsa-let-7f-5p hsa-let-7g-5p hsa-let-7i-5p hsa-miR-202-3p hsa-miR-4303 hsa-miR-4458 hsa-miR-4500 hsa-miR-4649-3p hsa-miR-7162-3p hsa-miR-98-5p |
20 20 20 20 20 20 20 20 20 20 20 20 20 20 20 |
ggCTACCTCAgaa ggCTACCTCAgaa ggCTACCTCAgaa ggCTACCTCAgaa ggCTACCTCAgaa ggCTACCTCAgaa ggCTACCTCAgaa ggCTACCTCAgaa ggcTACCTCAgaa ggctacCTCAGAA ggCTACCTCAgaa ggCTACCTCAgaa ggctaCCTCAGAa ggctACCTCAGAa ggCTACCTCAgaa |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N N N N N N N N |
-0.052 -0.052 -0.052 -0.052 -0.052 -0.052 -0.052 -0.052 -0.007 0.016 -0.052 -0.094 -0.007 -0.051 -0.052 |
G |
hsa-miR-4256 |
20 |
ggctacGTCAGAA |
Created |
N |
-0.008 |
|||
8315940 | rs4008232 | - | AT |
hsa-miR-5011-5p hsa-miR-5580-3p |
1 0 |
aTATATATgtatctt atatATATGTAtctt |
Unknown Unknown |
N N |
0.189 -0.002 |
- | |||||||||
8315941 | rs201493871 | - | A |
hsa-miR-190a-3p hsa-miR-5011-5p hsa-miR-5580-3p |
1 1 0 |
ATATATAtgtatc aTATATATgtatc atatATATGTAtc |
Unknown Unknown Unknown |
N N N |
0.06 0.171 0.092 |
G |
hsa-miR-4643 hsa-miR-466 hsa-miR-4789-3p |
0 |
atatATGTGTAtc atatATGTGTAtc ataTATGTGTAtc |
Unknown Unknown Unknown |
N N N |
0.046 0.028 0.045 |
|||
8315941 | rs5896234 | - | TA |
hsa-miR-190a-3p hsa-miR-5011-5p hsa-miR-5580-3p |
1 1 0 |
tATATATAtgtatct TATATATAtgtatct tatatATATGTAtct |
Unknown Unknown Unknown |
N N N |
0.069 0.189 -0.002 |
- | |||||||||
8316973 | rs1051863 | T | T |
hsa-miR-190a-3p hsa-miR-3201 hsa-miR-4791 hsa-miR-5011-5p |
13 13 13 13 |
cATATATAtccat catatATATCCAt catatATATCCAt caTATATATccat |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
0.038 -0.068 -0.068 0.119 |
C |
hsa-miR-3171 hsa-miR-4764-5p |
12 13 |
catATACATCcat catatACATCCAt |
Created Created |
N N |
-0.158 -0.1 |
|||
8316983 | rs149110910 | - | - |
hsa-miR-190a-3p hsa-miR-5011-5p |
17 17 |
gctaacATATATAcatata gctaacATATATAcatata |
Unknown Unknown |
N N |
0.01 0.006 |
CATA |
hsa-miR-297 hsa-miR-3924 hsa-miR-567 |
14 17 14 |
gctaACATACAtatatacatata gctaacATACATAtatacatata gctAACATACAtatatacatata |
Unknown Unknown Unknown |
N N N |
-0.107 -0.006 -0.121 |
|||
8317076 | rs180990247 | C | C |
hsa-miR-1225-5p hsa-miR-4506 |
12 14 |
aaaGTACCCAttc aaagtACCCATTc |
Disrupted Disrupted |
N N |
-0.226 -0.137 |
A |
hsa-miR-409-5p hsa-miR-4790-3p |
12 12 |
aaaGTAACCAttc aaagtaACCATTC |
Created Created |
N N |
-0.11 -0.144 |