SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000958 |
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Gene Symbol: | PTGER4 |
Description: | Homo sapiens prostaglandin E receptor 4 (subtype EP4) (PTGER4), mRNA. |
Gene Location: | chr5(+):40680031-40693837 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr5:g.40692453T>C | COSN1316037 | BN45T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4501 |
catGTCACATttagctgtg |
2 |
UAUGUGAC | m7b | (m7b->m6b) | -0.248000 | no TS | No effect |
hsa-miR-595 |
catgtCACACTTagctgtg |
0 | GAAGUGUG | m7b | Created | no TS | -0.358000 |
-2.270000 |
hsa-miR-648 |
catgtCACACTTagctgtg |
0 | AAGUGUGC | m7a | Created | NA | NA |
-0.480000 |
hsa-miR-4501 |
catGTCACATttagctgtg |
2 |
UAUGUGAC | m7b | (m7b->m6b) | -0.248000 | no TS | No effect |
hsa-miR-595 |
catgtCACACTTagctgtg |
0 | GAAGUGUG | m7b | Created | no TS | -0.358000 |
-2.270000 |
hsa-miR-648 |
catgtCACACTTagctgtg |
0 | AAGUGUGC | m7a | Created | NA | NA |
-0.480000 |
hsa-miR-4501 |
catGTCACATttagctgtg |
2 |
UAUGUGAC | m7b | (m7b->m6b) | -0.248 | no TS | No effect |
hsa-miR-595 |
catgtCACACTTagctgtg |
0 | GAAGUGUG | m7b | Created | no TS | -0.358 |
-2.27 |
hsa-miR-648 |
catgtCACACTTagctgtg |
0 | AAGUGUGC | m7a | Created | NA | NA |
-0.48 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr5:g.40692801T>A | COSN5076587 | HX22T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-578 |
actaaagCAAGAAatgtga |
0 | CUUCUUGU | m6b | Created | no TS | -0.057000 |
-0.650000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr5:g.40692952T>C | COSN2105999 | RK086_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr5:g.40693007C>T | COSN4849890 | tumor_4102009 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-144-5p |
gatTGATATCtataaaata |
3 |
GGAUAUCA | m7b | (m7b->m6b) | -0.233000 | no TS |
-0.280000 |
hsa-miR-340-5p |
gattgataTTTATAAaata |
0 | UUAUAAAG | m7a | Created | no TS | 0.050000 |
-0.950000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr5:g.40693364A>G | COSN7941725 | 8016470 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3941 |
agtGTGTGTAgttttactt |
7 |
UUACACAC | m7b | (m7b->m6b) | -0.233000 | -0.062000 |
0.070000 |
hsa-miR-497-3p |
agtgtgtGTGGTTTtactt |
0 | CAAACCAC | m7b | Created | no TS | -0.137000 |
-5.590000 |
hsa-miR-548a-3p |
agtgtgtgtAGTTTTactt |
4 |
CAAAACUG | m6b | Disrupted | -0.055000 | -0.091000 |
1.200000 |
hsa-miR-548aa |
agtgtgtgTGGTTTTactt |
7 |
AAAAACCA | m7b | Created | -0.257000 | -0.389000 |
-6.210000 |
hsa-miR-548ap-3p |
agtgtgtgTGGTTTTactt |
7 |
AAAAACCA | m7b | Created | -0.257000 | -0.389000 |
-6.460000 |
hsa-miR-548at-3p |
agtgtgtgtGGTTTTactt |
8 |
CAAAACCG | m6b | Created | -0.100000 | -0.146000 |
-5.230000 |
hsa-miR-548e |
agtgtgtgtAGTTTTactt |
4 |
AAAAACUG | m6b | Disrupted | -0.050000 | -0.082000 |
0.400000 |
hsa-miR-548f |
agtgtgtgtAGTTTTactt |
4 |
AAAAACUG | m6b | Disrupted | -0.059000 | -0.091000 |
1.460000 |
hsa-miR-548t-3p |
agtgtgtgTGGTTTTactt |
7 |
AAAAACCA | m7b | Created | -0.257000 | -0.389000 |
-6.210000 |