SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_002767
Gene Symbol: PRPSAP2
Description: Homo sapiens phosphoribosyl pyrophosphate synthetase-associated protein 2 (PRPSAP2), transcript variant 2, mRNA.
Gene Location: chr17(+):18761491-18834580
Browse Associations

Somatic mutations that impact miRNA target sites




Mutation Mutation ID Sample Name Cancer Type
chr17:g.18930878G>T COSN1193840 HCC1T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr17:g.18931228G>A COSN6100198 RK308_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-192-3p tgtgttTTGGCAatcgttt
6
CUGCCAAU m6b Disrupted -0.177000 no TS 3.170000
hsa-miR-219-5p tgtgttttGACAATCgttt
0 UGAUUGUC m7b Created no TS -0.296000 -5.180000
hsa-miR-4782-3p tgtgttttGACAATCgttt
0 UGAUUGUC m7b Created no TS -0.268000 -1.390000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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