SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_001199756
Gene Symbol: PPP2R5A
Description: Homo sapiens protein phosphatase 2, regulatory subunit B, alpha (PPP2R5A), transcript variant 2, mRNA.
Gene Location: chr1(+):212475147-212535205
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr1:g.212360797T>C COSN163432 GC8_T [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-214-5p tctgccgGACAGGCAgagt
0 UGCCUGUC m8a Created no TS -0.378000 -1.880000
hsa-miR-214-5p tctgccgGACAGGCAgagt
0 UGCCUGUC m8a Created no TS -0.378 -1.88

Mutation Mutation ID Sample Name Cancer Type
chr1:g.212360843A>G COSN163433 GC7_T [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-19a-5p aattaCAAAACaaacctca
0 AGUUUUGC m6b Disrupted -0.174000 -0.088000 0.160000
hsa-miR-19b-1-5p aattaCAAAACaaacctca
0 AGUUUUGC m6b Disrupted -0.177000 -0.088000 0.180000
hsa-miR-19b-2-5p aattaCAAAACaaacctca
0 AGUUUUGC m6b Disrupted -0.177000 -0.088000 0.280000
hsa-miR-2052 aattaCAAAACAaacctca
0 UGUUUUGA m7a Disrupted -0.085000 no TS 0.980000
hsa-miR-5087 aattacaaaACAAACCtca
0 GGGUUUGU m7b (m7b->m6c) -0.278000 no TS -0.800000
hsa-miR-19a-5p aattaCAAAACaaacctca
0 AGUUUUGC m6b Disrupted -0.174 -0.088 0.16
hsa-miR-19b-1-5p aattaCAAAACaaacctca
0 AGUUUUGC m6b Disrupted -0.177 -0.088 0.18
hsa-miR-19b-2-5p aattaCAAAACaaacctca
0 AGUUUUGC m6b Disrupted -0.177 -0.088 0.28
hsa-miR-2052 aattaCAAAACAaacctca
0 UGUUUUGA m7a Disrupted -0.085 no TS 0.98
hsa-miR-5087 aattacaaaACAAACCtca
0 GGGUUUGU m7b (m7b->m6c) -0.278 no TS -0.8

Mutation Mutation ID Sample Name Cancer Type
chr1:g.212361247T>C COSN1429530 RK084_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-96-3p acccagaaACATGATgggg
0 AAUCAUGU m7b Created no TS -0.041000 -2.030000
hsa-miR-96-3p acccagaaACATGATgggg
0 AAUCAUGU m7b Created no TS -0.041000 -2.030000
hsa-miR-96-3p acccagaaACATGATgggg
0 AAUCAUGU m7b Created no TS -0.041000 -2.030000
hsa-miR-96-3p acccagaaACATGATgggg
0 AAUCAUGU m7b Created no TS -0.041 -2.03

Mutation Mutation ID Sample Name Cancer Type
chr1:g.212361690T>G COSN6440765 CHC205T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-505-3p aagGTTGACGatatagagg
0 CGUCAACA m7a (m6a->m7a) NA NA -0.020000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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