SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_152705
Gene Symbol: POLR1D
Description: Homo sapiens polymerase (RNA) I polypeptide D, 16kDa (POLR1D), transcript variant 3, mRNA.
Gene Location: chr13(+):28195915-28241559
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr13:g.27666031G>A COSN6225451 RK207_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1202 cctgaGCTGGCAgggcaaa
 0 GUGCCAGC m7b Disrupted -0.195000 no TS 0.730000
hsa-miR-146b-3p cctgagctgACAGGGCAaa
 2
 UGCCCUGU m8a (m7b->m8a) -0.192000 -0.453000 -1.080000
hsa-miR-3173-5p cctgagctgGCAGGGCAaa
 2
 UGCCCUGC m8a (m8a->m7b) -0.447000 -0.168000 5.720000
hsa-miR-3194-5p cctgaGCTGGCagggcaaa
 0 GGCCAGCC m6b Disrupted -0.159000 no TS 4.550000
hsa-miR-339-5p cctgagctGACAGGGcaaa
 0 UCCCUGUC m7b Created no TS -0.241000 -1.980000
hsa-miR-3972 cctgaGCTGGCAGggcaaa
 0 CUGCCAGC m8a Disrupted -0.205000 no TS 5.430000
hsa-miR-4267 cctGAGCTGGcagggcaaa
 0 UCCAGCUC m7b (m7b->m6b) -0.173000 no TS No effect
hsa-miR-4722-3p cctgagcTGGCAGGgcaaa
 2
 ACCUGCCA m7b Disrupted -0.146000 no TS 5.680000

Mutation Mutation ID Sample Name Cancer Type
chr13:g.27666643A>G COSN5723363 HX32T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-23a-5p gctttaaaaGGAACCCtca
 0 GGGGUUCC m7b (m6c->m7b) no TS -0.213000 -4.370000
hsa-miR-23b-5p gctttaaaaGGAACCCtca
 0 UGGGUUCC m7b (m6c->m7b) no TS -0.250000 -4.630000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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