SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_001004426
Gene Symbol: PLA2G6
Description: Homo sapiens phospholipase A2, group VI (cytosolic, calcium-independent) (PLA2G6), transcript variant 2, mRNA.
Gene Location: chr22(-):38507501-38577761
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr22:g.38111677G>A COSN1261820 HCC111T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3124-3p ccatcagctAGGAAAGccc
0 ACUUUCCU m7b (m6b->m7b) no TS -0.016000 -2.120000
hsa-miR-384 ccatcagCTAGGAAagccc
0 AUUCCUAG m7b Created no TS -0.152000 -1.930000
hsa-miR-5571-3p ccatcagCTAGGAaagccc
0 GUCCUAGG m6b Created no TS -0.083000 No effect
hsa-miR-3124-3p ccatcagctAGGAAAGccc
0 ACUUUCCU m7b (m6b->m7b) no TS -0.016000 -2.120000
hsa-miR-384 ccatcagCTAGGAAagccc
0 AUUCCUAG m7b Created no TS -0.152000 -1.930000
hsa-miR-5571-3p ccatcagCTAGGAaagccc
0 GUCCUAGG m6b Created no TS -0.083000 No effect
hsa-miR-3124-3p ccatcagctAGGAAAGccc
0 ACUUUCCU m7b (m6b->m7b) no TS -0.016 -2.12
hsa-miR-384 ccatcagCTAGGAAagccc
0 AUUCCUAG m7b Created no TS -0.152 -1.93
hsa-miR-5571-3p ccatcagCTAGGAaagccc
0 GUCCUAGG m6b Created no TS -0.083 No effect

Mutation Mutation ID Sample Name Cancer Type
chr22:g.38111728G>A COSN9165769 AOCS-059-1-8 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1292 ctctgctcCGTTCCCtggg
1
UGGGAACG m7b Disrupted -0.160000 no TS 5.420000

Mutation Mutation ID Sample Name Cancer Type
chr22:g.38111811C>A COSN6692914 CHC320T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1205 agggCCTGCAGggctgcct
0 UCUGCAGG m7b Created no TS -0.009000 No effect
hsa-miR-3173-5p agggcctGCAGGGCtgcct
0 UGCCCUGC m7b Created no TS -0.152000 -1.100000
hsa-miR-3940-3p agggcctgCCGGGCTGcct
0 CAGCCCGG m8a Disrupted -0.183000 no TS 0.380000

Mutation Mutation ID Sample Name Cancer Type
chr22:g.38112077A>G COSN10030398 C0038T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-18a-3p ctcccGGGCAGatctgggc
4
ACUGCCCU m6b Disrupted -0.131000 no TS 0.910000
hsa-miR-324-3p ctcccGGGCAGatctgggc
4
ACUGCCCC m6b Disrupted -0.129000 no TS 6.410000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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