SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_001004426 |
---|---|
Gene Symbol: | PLA2G6 |
Description: | Homo sapiens phospholipase A2, group VI (cytosolic, calcium-independent) (PLA2G6), transcript variant 2, mRNA. |
Gene Location: | chr22(-):38507501-38577761 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr22:g.38111677G>A | COSN1261820 | HCC111T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3124-3p |
ccatcagctAGGAAAGccc |
0 | ACUUUCCU | m7b | (m6b->m7b) | no TS | -0.016000 |
-2.120000 |
hsa-miR-384 |
ccatcagCTAGGAAagccc |
0 | AUUCCUAG | m7b | Created | no TS | -0.152000 |
-1.930000 |
hsa-miR-5571-3p |
ccatcagCTAGGAaagccc |
0 | GUCCUAGG | m6b | Created | no TS | -0.083000 | No effect |
hsa-miR-3124-3p |
ccatcagctAGGAAAGccc |
0 | ACUUUCCU | m7b | (m6b->m7b) | no TS | -0.016000 |
-2.120000 |
hsa-miR-384 |
ccatcagCTAGGAAagccc |
0 | AUUCCUAG | m7b | Created | no TS | -0.152000 |
-1.930000 |
hsa-miR-5571-3p |
ccatcagCTAGGAaagccc |
0 | GUCCUAGG | m6b | Created | no TS | -0.083000 | No effect |
hsa-miR-3124-3p |
ccatcagctAGGAAAGccc |
0 | ACUUUCCU | m7b | (m6b->m7b) | no TS | -0.016 |
-2.12 |
hsa-miR-384 |
ccatcagCTAGGAAagccc |
0 | AUUCCUAG | m7b | Created | no TS | -0.152 |
-1.93 |
hsa-miR-5571-3p |
ccatcagCTAGGAaagccc |
0 | GUCCUAGG | m6b | Created | no TS | -0.083 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr22:g.38111728G>A | COSN9165769 | AOCS-059-1-8 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1292 |
ctctgctcCGTTCCCtggg |
1 |
UGGGAACG | m7b | Disrupted | -0.160000 | no TS |
5.420000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr22:g.38111811C>A | COSN6692914 | CHC320T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1205 |
agggCCTGCAGggctgcct |
0 | UCUGCAGG | m7b | Created | no TS | -0.009000 | No effect |
hsa-miR-3173-5p |
agggcctGCAGGGCtgcct |
0 | UGCCCUGC | m7b | Created | no TS | -0.152000 |
-1.100000 |
hsa-miR-3940-3p |
agggcctgCCGGGCTGcct |
0 | CAGCCCGG | m8a | Disrupted | -0.183000 | no TS |
0.380000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr22:g.38112077A>G | COSN10030398 | C0038T | [kidney][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-18a-3p |
ctcccGGGCAGatctgggc |
4 |
ACUGCCCU | m6b | Disrupted | -0.131000 | no TS |
0.910000 |
hsa-miR-324-3p |
ctcccGGGCAGatctgggc |
4 |
ACUGCCCC | m6b | Disrupted | -0.129000 | no TS |
6.410000 |