SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000318 |
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Gene Symbol: | PEX2 |
Description: | Homo sapiens peroxisomal biogenesis factor 2 (PEX2), transcript variant 1, mRNA. |
Gene Location: | chr8(-):77892493-77912524 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.76980383A>T | COSN15394147 | AOCS-092-1-6 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3138 |
catttcaaaTGTCCACAtt |
2 |
UGUGGACA | m8a | (m7a->m8a) | -0.199000 | -0.465000 |
1.910000 |
hsa-miR-5009-5p |
catttcaaAAGTCCAcatt |
3 |
UUGGACUU | m7b | Disrupted | -0.360000 | -0.129000 |
3.100000 |
hsa-miR-3138 |
catttcaaaTGTCCACAtt |
2 |
UGUGGACA | m8a | (m7a->m8a) | -0.199000 | -0.465000 |
1.910000 |
hsa-miR-5009-5p |
catttcaaAAGTCCAcatt |
3 |
UUGGACUU | m7b | Disrupted | -0.360000 | -0.129000 |
3.100000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.76980522T>C | COSN9680663 | AOCS-166-1-2 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.76980581A>C | COSN6363646 | RK134_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4505 |
cattcctgaCCCAGCCact |
1 |
AGGCUGGG | m7b | (m6b->m7b) | -0.426000 | -0.696000 |
-0.030000 |
hsa-miR-5589-5p |
cattcctgACCCAGCCact |
1 |
GGCUGGGU | m8a | Created | -0.097000 | -0.303000 |
-0.260000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.76981223T>G | ICGC_E5078106-2A78-11E2-9A67-27FD496BB9B8 | CPCG_0103_Pr_P_P7 | ProstateCancer(OICR,CA) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1224-3p |
tcccaaagtGGTGGGatta |
0 | CCCCACCU | m6b | Created | no TS | -0.071 |
-0.06 |
hsa-miR-1255b-2-3p |
tcccaAAGTGGTgggatta |
0 | AACCACUU | m7b | Created | no TS | 0.015 |
-0.32 |
hsa-miR-1260a |
tcccaaagtGGTGGGATta |
0 | AUCCCACC | m8a | (m7a->m8a) | no TS | -0.104 |
-0.11 |
hsa-miR-1260b |
tcccaaagtGGTGGGATta |
0 | AUCCCACC | m8a | (m7a->m8a) | no TS | -0.113 |
-0.56 |
hsa-miR-188-3p |
tcccaaagtTGTGGGAtta |
0 | CUCCCACA | m7b | (m7b->m6b) | -0.112 | no TS |
3.26 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.76981498A>T | COSN8102028 | 8033691 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-508-3p |
tataTACAATCgtctttgt |
0 | UGAUUGUA | m7b | Created | no TS | -0.109000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.76981659A>G | COSN14702585 | CHC433T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-338-5p |
aaaatTATTGTaatgcata |
2 |
AACAAUAU | m6b | Created | 0.105000 | 0.177000 |
-1.830000 |
hsa-miR-369-3p |
aaaatTATTATaatgcata |
0 | AAUAAUAC | m6b | Disrupted | -0.044000 | -0.151000 |
0.030000 |
hsa-miR-374a-5p |
aaaatTATTATAAtgcata |
1 |
UUAUAAUA | m8a | Disrupted | 0.131000 | no TS |
0.260000 |
hsa-miR-374b-5p |
aaaatTATTATAatgcata |
1 |
AUAUAAUA | m7b | Disrupted | 0.152000 | no TS |
0.190000 |
hsa-miR-4528 |
aaaattatTATAATGcata |
3 |
UCAUUAUA | m7b | Disrupted | 0.020000 | no TS |
0.120000 |
hsa-miR-5692b |
aaaatTATTATaatgcata |
6 |
AAUAAUAU | m6b | Disrupted | -0.003000 | -0.117000 |
0.170000 |
hsa-miR-5692c |
aaaatTATTATaatgcata |
6 |
AAUAAUAU | m6b | Disrupted | -0.003000 | -0.117000 |
0.190000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.76981874G>A | COSN9680664 | AOCS-105-1-9 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-16-1-3p |
taagATACTGaagaagttt |
2 |
CCAGUAUU | m6b | Disrupted | -0.068000 | -0.097000 | No effect |
hsa-miR-222-5p |
taagaTACTGAagaagttt |
1 |
CUCAGUAG | m6b | Disrupted | 0.029000 | no TS | No effect |
hsa-miR-4778-3p |
taagatactGAAGAAGttt |
2 |
UCUUCUUC | m7b | (m7b->m6b) | -0.007000 | no TS |
3.620000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.76982407G>A | COSN195763 | PD4199a | [NS][NS][NS][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-498 |
ggcaGCTTGAAAgtgaggc |
1 |
UUUCAAGC | m8a | Created | -0.062000 | -0.117000 | No effect |
hsa-miR-498 |
ggcaGCTTGAAAgtgaggc |
0 | UUUCAAGC | m8a | Created | -0.062 | -0.117 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.76982447G>A | COSN6363647 | RK308_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-142-5p |
ccacagttgACTTTATatt |
2 |
CAUAAAGU | m7b | (m6b->m7b) | 0.064000 | 0.047000 |
-0.240000 |
hsa-miR-5590-3p |
ccacagttgACTTTATatt |
2 |
AAUAAAGU | m7b | (m6b->m7b) | 0.048000 | 0.016000 |
-0.010000 |
hsa-miR-9-3p |
ccacagttgGCTTTATatt |
0 | AUAAAGCU | m7a | (m7a->m6a) | NA | NA | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.76982549G>A | COSN2290366 | RK091_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4284 |
attacagacGTGAGCCact |
2 |
GGGCUCAC | m7b | (m7b->m6b) | -0.206000 | -0.081000 |
-0.030000 |
hsa-miR-654-3p |
attaCAGACATgagccact |
0 | UAUGUCUG | m7b | Created | no TS | -0.068000 |
-0.380000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.76982744G>C | ICGC_7F59DA02-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-25-5p |
cactgcaacCTCCGCCTcc |
0 | AGGCGGAG | m8a | (m7a->m8a) | no TS | -0.185 | No effect |
hsa-miR-377-5p |
cactgCAACCTCcgcctcc |
0 | AGAGGUUG | m7b | Created | no TS | -0.014 | No effect |
hsa-miR-658 |
cactgcaaCCTCCGCCtcc |
0 | GGCGGAGG | m8a | Created | no TS | -0.224 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.76982943G>C | COSN9680665 | AOCS-141-3-2 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4307 |
gattctAAACATaaagatt |
2 |
AAUGUUUU | m6b | Created | 0.053000 | 0.066000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.76983032A>G | COSN2290367 | RK157_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3117-5p |
caattttTAGTGTCaagaa |
0 | AGACACUA | m7b | Created | no TS | -0.388000 |
-4.420000 |
hsa-miR-4704-5p |
caattttTAGTGTCaagaa |
2 |
GACACUAG | m7a | Created | -0.121000 | -0.121000 |
-0.010000 |
hsa-miR-489 |
caatttttaATGTCAagaa |
0 | GUGACAUC | m6b | Disrupted | -0.116000 | no TS |
0.010000 |
hsa-miR-514a-3p |
caatttttaGTGTCAAgaa |
0 | AUUGACAC | m7b | (m6b->m7b) | no TS | -0.252000 |
-4.490000 |
hsa-miR-514b-3p |
caatttttaGTGTCAAgaa |
0 | AUUGACAC | m7b | (m6b->m7b) | no TS | -0.252000 |
-1.740000 |