SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_004565
Gene Symbol: PEX14
Description: Homo sapiens peroxisomal biogenesis factor 14 (PEX14), mRNA.
Gene Location: chr1(+):10535002-10690815
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr1:g.10630652T>C COSN5730146 HX32T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3202 ccagctctgCCCTTCCccc
0 UGGAAGGG m7b (m6c->m7b) no TS -0.170000 -2.610000
hsa-miR-4436b-3p ccagctCTGCCCTtccccc
0 CAGGGCAG m7b Created no TS -0.174000 No effect
hsa-miR-4533 ccagctctgTCCTTCCccc
4
UGGAAGGA m7b (m7b->m6c) -0.087000 no TS 0.020000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Genome Browser