SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_001131027 |
---|---|
Gene Symbol: | PDLIM4 |
Description: | Homo sapiens PDZ and LIM domain 4 (PDLIM4), transcript variant 2, mRNA. |
Gene Location: | chr5(+):131593350-131609147 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr5:g.132272393A>G | COSN9925826 | C0021T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3117-5p |
tacagTAGTGTCTgcttag |
0 | AGACACUA | m8a | Created | no TS | -0.090000 |
-4.530000 |
|
hsa-miR-3166 |
tacagtagTGTCTGCttag |
2 |
CGCAGACA | m7b | Created | -0.045000 | -0.231000 |
-0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr5:g.132272669G>T | COSN1307316 | HCC39T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-361-3p |
aggtgagCTGGGGGcgaga |
1 |
UCCCCCAG | m7b | Disrupted | -0.111000 | no TS |
-0.010000 |
|
hsa-miR-4267 |
aggtGAGCTGGgggcgaga |
1 |
UCCAGCUC | m7b | Disrupted | -0.284000 | -0.161000 |
5.840000 |
|
hsa-miR-361-3p |
aggtgagCTGGGGGcgaga |
1 |
UCCCCCAG | m7b | Disrupted | -0.111000 | no TS |
-0.010000 |
|
hsa-miR-4267 |
aggtGAGCTGGgggcgaga |
1 |
UCCAGCUC | m7b | Disrupted | -0.284000 | -0.161000 |
5.840000 |
|
hsa-miR-361-3p |
aggtgagCTGGGGGcgaga |
1 |
UCCCCCAG | m7b | Disrupted | -0.111 | no TS |
-0.01 |
|
hsa-miR-4267 |
aggtGAGCTGGgggcgaga |
1 |
UCCAGCUC | m7b | Disrupted | -0.284 | -0.161 |
5.84 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr5:g.132272838T>C | COSN1307318 | HX12T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
132272235 | rs145387656 | G | G |
hsa-miR-7977 |
1 |
aGCTGGGAccctg |
Disrupted |
N |
-0.147 |
A |
hsa-miR-23a-5p hsa-miR-23b-5p hsa-miR-4267 hsa-miR-6512-3p hsa-miR-6720-5p hsa-miR-6823-5p |
1 1 2 1 1 1 |
agctGGAACCCtg agctGGAACCCtg AGCTGGAaccctg aGCTGGAAccctg aGCTGGAAccctg agctggAACCCTG |
Created Created Created Created Created Created |
N N N N N N |
-0.199 -0.19 -0.195 -0.085 -0.092 -0.081 |