SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001142767 |
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Gene Symbol: | PCDH15 |
Description: | Homo sapiens protocadherin-related 15 (PCDH15), transcript variant A, mRNA. |
Gene Location: | chr10(-):55580859-56561051 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.53821104C>A | COSN5877073 | RK211_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-606 |
atcttgAGTAGTTg |
0 | AAACUACU | m7b | Created | no TS | -0.150000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.53821247T>C | COSN8530964 | tumor_4120193 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3910 |
ctgactTGCCTTTatctta |
0 | AAAGGCAU | m7a | Created | NA | NA |
-0.880000 |
hsa-miR-4422 |
ctgactTGCTTTTatctta |
0 | AAAAGCAU | m7a | Disrupted | NA | NA |
0.620000 |
hsa-miR-4484 |
ctgacttGCCTTTatctta |
0 | AAAAGGCG | m6b | Created | no TS | -0.155000 |
-0.900000 |
hsa-miR-548an |
ctgactTGCCTTTatctta |
0 | AAAAGGCA | m7b | Created | no TS | -0.320000 |
-1.090000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.53821264C>A | COSN8640339 | J87_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.53821708A>G | COSN4714852 | tumor_4160468 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-302c-5p |
taaaaagATGTTAAcctca |
0 | UUUAACAU | m7b | Created | no TS | -0.054000 | No effect |
hsa-miR-3143 |
taaaaagATGTTAacctca |
0 | AUAACAUU | m6b | Created | no TS | -0.039000 |
0.015000 |
hsa-miR-889 |
taaaaaGATATTAAcctca |
0 | UUAAUAUC | m8a | Disrupted | -0.200000 | no TS |
2.880000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.53821803T>A | COSN6973867 | 8058184 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-452-3p |
gtcttcaAGATGAacatca |
0 | CUCAUCUG | m6b | Created | no TS | -0.092000 |
-0.170000 |
hsa-miR-4635 |
gtCTTCAAGAtgaacatca |
4 |
UCUUGAAG | m8a | (m7b->m8a) | -0.180000 | -0.300000 |
-0.820000 |