SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_020528
Gene Symbol: PCBP3
Description: Homo sapiens poly(rC) binding protein 3 (PCBP3), transcript variant 2, mRNA.
Gene Location: chr21(+):47269874-47362368
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr21:g.45941768G>A COSN8315640 TCGA-BH-A18G-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-574-5p ccggctctCACACTCtgta
 0 UGAGUGUG m7b Created no TS -0.124000 -0.440000

Mutation Mutation ID Sample Name Cancer Type
chr21:g.45942397C>T COSN1894214 RK022_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-221-5p gcacagacgTGCCAGGgag
 0 ACCUGGCA m7b (m6c->m7b) -0.124000 -0.273000 No effect
hsa-miR-4634 gcacagaCGCGCCagggag
 2
 CGGCGCGA m6b Disrupted -0.258000 no TS 1.080000
hsa-miR-564 gcacagaCGTGCCagggag
 0 AGGCACGG m6b Created no TS -0.175000 -3.270000
hsa-miR-221-5p gcacagacgTGCCAGGgag
 0 ACCUGGCA m7b (m6c->m7b) -0.124000 -0.273000 No effect
hsa-miR-4634 gcacagaCGCGCCagggag
 2
 CGGCGCGA m6b Disrupted -0.258000 no TS 1.080000
hsa-miR-564 gcacagaCGTGCCagggag
 0 AGGCACGG m6b Created no TS -0.175000 -3.270000
hsa-miR-221-5p gcacagacgTGCCAGGgag
 0 ACCUGGCA m7b (m6c->m7b) -0.124 -0.273 No effect
hsa-miR-4634 gcacagaCGCGCCagggag
 2
 CGGCGCGA m6b Disrupted -0.258 no TS 1.08
hsa-miR-564 gcacagaCGTGCCagggag
 0 AGGCACGG m6b Created no TS -0.175 -3.27

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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