SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001618 |
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Gene Symbol: | PARP1 |
Description: | Homo sapiens poly (ADP-ribose) polymerase 1 (PARP1), mRNA. |
Gene Location: | chr1(-):226548391-226595801 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
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chr1:g.226361388A>C | COSN8309056 | TCGA-A8-A0A6-01 | [breast][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-125a-3p |
caccaacTCACCTGgccgc |
2 |
ACAGGUGA | m7b | Disrupted | -0.123000 | no TS |
5.090000 |
hsa-miR-571 |
caCCAACTCAcctggccgc |
2 |
UGAGUUGG | m8a | (m8a->m7b) | -0.329000 | -0.142000 |
1.330000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.226361440C>T | COSN8309057 | TCGA-A2-A3XU-01 | [breast][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4455 |
tagccgagtCACACCCggt |
0 | AGGGUGUG | m7b | (m7b->m6b) | -0.156000 | no TS | No effect |