| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_004561 |
|---|---|
| Gene Symbol: | OVOL1 |
| Description: | Homo sapiens ovo-like 1(Drosophila) (OVOL1), mRNA. |
| Gene Location: | chr11(+):65554528-65564685 |
| Browse Associations | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr11:g.65796312G>A | COSN8282747 | ASHPC_0017_Pa_P | [pancreas][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-30b-3p |
ttcCCTCCCAGctctgccc |
2 |
CUGGGAGG | m8a | Created | -0.127000 | -0.130000 | No effect |
| hsa-miR-3192 |
ttccCTCCCAGctctgccc |
2 |
UCUGGGAG | m7b | Created | -0.104000 | -0.152000 | No effect |
| hsa-miR-3689a-3p |
ttcCCTCCCAGctctgccc |
2 |
CUGGGAGG | m8a | Created | -0.127000 | -0.139000 |
-0.010000 |
| hsa-miR-3689b-3p |
ttcCCTCCCAGctctgccc |
2 |
CUGGGAGG | m8a | Created | -0.127000 | -0.139000 | No effect |
| hsa-miR-3689c |
ttcCCTCCCAGctctgccc |
2 |
CUGGGAGG | m8a | Created | -0.127000 | -0.139000 | No effect |
| hsa-miR-4487 |
ttccctcCCAGCTCTgccc |
0 | AGAGCUGG | m8a | Created | no TS | -0.051000 |
-0.880000 |
| hsa-miR-4728-5p |
ttCCCTCCCAgctctgccc |
2 |
UGGGAGGG | m8a | (m7a->m8a) | -0.228000 | -0.353000 |
-0.210000 |
| Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
|---|---|---|---|---|---|---|---|---|---|
| 65796312 | rs139344672 | G | |||||||
| A |
hsa-miR-1273h-5p hsa-miR-149-3p hsa-miR-30b-3p hsa-miR-3192-5p hsa-miR-3689a-3p hsa-miR-3689b-3p hsa-miR-3689c hsa-miR-4487 hsa-miR-4728-5p hsa-miR-6779-5p hsa-miR-6780a-5p hsa-miR-6785-5p hsa-miR-6799-5p hsa-miR-6883-5p hsa-miR-7106-5p |
8 8 8 9 8 8 8 8 8 8 8 8 8 8 8 |
CCTCCCAgctctg CCTCCCAgctctg CCTCCCAgctctg cCTCCCAGctctg CCTCCCAgctctg CCTCCCAgctctg CCTCCCAgctctg cctcCCAGCTCtg CCTCCCAgctctg CCTCCCAgctctg CCTCCCAgctctg CCTCCCAgctctg CCTCCCAgctctg CCTCCCAgctctg CCTCCCAgctctg |
Created Created Created Created Created Created Created Created Created Created Created Created Created Created Created |
N N N N N N N N N N N N N N N |
-0.021 -0.121 -0.003 -0.048 -0.012 -0.012 -0.012 -0.051 -0.125 0.016 -0.04 -0.121 -0.059 -0.121 -0.043 |