SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_016829
Gene Symbol: OGG1
Description: Homo sapiens 8-oxoguanine DNA glycosylase (OGG1), nuclear gene encoding mitochondrial protein, transcript variant 1a, mRNA.
Gene Location: chr3(+):9791627-9808353
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.9765834G>A ICGC_1311393 TCGA-AX-A0J0-01A-11D-A117-09 UterineCorpusEndometrioidCarcinoma(TCGA,US)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3187-3p catttgATGGCCAccagct
 0 UUGGCCAU m7b Disrupted -0.568 -0.387 0.02
hsa-miR-323a-5p catttgatGACCACCagct
 0 AGGUGGUC m7b Created no TS -0.465 0.96
hsa-miR-4529-5p catttGATGGCCaccagct
 0 AGGCCAUC m7b Disrupted -0.655 -0.181 4.52
hsa-miR-663b catttgatGGCCACCagct
 0 GGUGGCCC m7a Disrupted -0.148 -0.148 0.12

Mutation Mutation ID Sample Name Cancer Type
chr3:g.9765878C>T ICGC_1311394 TCGA-AP-A0LM-01A-11D-A122-09 UterineCorpusEndometrioidCarcinoma(TCGA,US)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3689d gatCACCTCCgagaaggcc
 0 GGGAGGUG m7b (m7b->m6b) -0.202 no TS 0.26
hsa-miR-3917 gatcaccTCCGAGaaggcc
 0 GCUCGGAC m6b Disrupted -0.198 no TS No effect
hsa-miR-4257 gatcACCTCTGagaaggcc
 0 CCAGAGGU m7b Created no TS -0.3 -6.23
hsa-miR-4330 gatcaccTCTGAGaaggcc
 0 CCUCAGAU m6b Created no TS -0.081 -4.11

Mutation Mutation ID Sample Name Cancer Type
chr3:g.9765970C>A ICGC_1311395 TCGA-AX-A0J0-01A-11D-A117-09 UterineCorpusEndometrioidCarcinoma(TCGA,US)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1273d ctATGGGTTCtgtgaccac
 0 GAACCCAU m8a (m8a->m7a) -0.146 -0.313 0.01

Mutation Mutation ID Sample Name Cancer Type
chr3:g.9765974G>C cosmic_v64_1474872 Serous Ovarian
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3545-5p gggttctgtGACCACTgct
 0 UAGUGGUC m7b (m7b->m6c) -0.181 no TS No effect
hsa-miR-542-3p gggttCTGTCACcactgct
 0 UGUGACAG m7b Created no TS -0.166 -5.97
hsa-miR-5587-5p gggttctGTGACCActgct
 0 AUGGUCAC m7b Disrupted -0.166 no TS 0.01

Mutation Mutation ID Sample Name Cancer Type
chr3:g.9766007C>T ICGC_ssm_v3_12148 BN28T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-149-3p gatgaCCCTCCCctagtca
 0 AGGGAGGG m7b Disrupted -0.185 no TS 0.01
hsa-miR-3202 gatgaCCCTTCCctagtca
 0 UGGAAGGG m7b Created no TS -0.155 No effect
hsa-miR-4728-5p gatgaCCCTCCCctagtca
 0 UGGGAGGG m7b Disrupted -0.203 no TS 0.01
hsa-miR-4747-5p gatgacCCTTCCCTagtca
 0 AGGGAAGG m8a Created no TS -0.146 No effect
hsa-miR-5196-5p gatgacCCTTCCCTagtca
 0 AGGGAAGG m8a Created no TS -0.128 No effect
hsa-miR-5584-5p gatgacccTTCCCTagtca
 0 CAGGGAAA m6b Created -0.063 -0.114 0.15

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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