SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_016827 |
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Gene Symbol: | OGG1 |
Description: | Homo sapiens 8-oxoguanine DNA glycosylase (OGG1), nuclear gene encoding mitochondrial protein, transcript variant 1a, mRNA. |
Gene Location: | chr3(+):9791627-9808353 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.9765878C>T | ICGC_1311394 | TCGA-AP-A0LM-01A-11D-A122-09 | UterineCorpusEndometrioidCarcinoma(TCGA,US) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3689d |
gatCACCTCCgagaaggcc |
0 | GGGAGGUG | m7b | (m7b->m6b) | -0.21 | no TS |
2.28 |
hsa-miR-3917 |
gatcaccTCCGAGaaggcc |
0 | GCUCGGAC | m6b | Disrupted | -0.204 | no TS |
0.01 |
hsa-miR-4257 |
gatcACCTCTGagaaggcc |
0 | CCAGAGGU | m7b | Created | no TS | -0.314 |
-4.58 |
hsa-miR-4330 |
gatcaccTCTGAGaaggcc |
0 | CCUCAGAU | m6b | Created | no TS | -0.087 |
-5.39 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.9765970C>A | ICGC_1311395 | TCGA-AX-A0J0-01A-11D-A117-09 | UterineCorpusEndometrioidCarcinoma(TCGA,US) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1273d |
ctATGGGTTCtgtgaccac |
0 | GAACCCAU | m8a | (m8a->m7a) | -0.154 | -0.327 |
0.01 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.9765974G>C | cosmic_v64_1474872 | Serous | Ovarian | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3545-5p |
gggttctgtGACCACTgct |
0 | UAGUGGUC | m7b | (m7b->m6c) | -0.189 | no TS |
-0.01 |
hsa-miR-542-3p |
gggttCTGTCACcactgct |
0 | UGUGACAG | m7b | Created | no TS | -0.174 |
-5.97 |
hsa-miR-5587-5p |
gggttctGTGACCActgct |
0 | AUGGUCAC | m7b | Disrupted | -0.174 | no TS | No effect |
hsa-miR-3545-5p |
gggttctgtGACCACTgct |
0 | UAGUGGUC | m7b | (m7b->m6c) | -0.189000 | no TS |
-0.010000 |
hsa-miR-542-3p |
gggttCTGTCACcactgct |
0 | UGUGACAG | m7b | Created | no TS | -0.174000 |
-5.970000 |
hsa-miR-5587-5p |
gggttctGTGACCActgct |
0 | AUGGUCAC | m7b | Disrupted | -0.174000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.9766007C>T | ICGC_ssm_v3_12148 | BN28T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-149-3p |
gatgaCCCTCCCctagtca |
0 | AGGGAGGG | m7b | Disrupted | -0.192 | no TS |
0.01 |
hsa-miR-3202 |
gatgaCCCTTCCctagtca |
0 | UGGAAGGG | m7b | Created | no TS | -0.162 | No effect |
hsa-miR-4728-5p |
gatgaCCCTCCCctagtca |
0 | UGGGAGGG | m7b | Disrupted | -0.21 | no TS | No effect |
hsa-miR-4747-5p |
gatgacCCTTCCCTagtca |
0 | AGGGAAGG | m8a | Created | no TS | -0.153 | No effect |
hsa-miR-5196-5p |
gatgacCCTTCCCTagtca |
0 | AGGGAAGG | m8a | Created | no TS | -0.135 | No effect |
hsa-miR-5584-5p |
gatgacccTTCCCTagtca |
0 | CAGGGAAA | m6b | Created | -0.069 | -0.126 |
0.15 |