SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_016827
Gene Symbol: OGG1
Description: Homo sapiens 8-oxoguanine DNA glycosylase (OGG1), nuclear gene encoding mitochondrial protein, transcript variant 1a, mRNA.
Gene Location: chr3(+):9791627-9808353
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr3:g.9765878C>T ICGC_1311394 TCGA-AP-A0LM-01A-11D-A122-09 UterineCorpusEndometrioidCarcinoma(TCGA,US)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3689d gatCACCTCCgagaaggcc
0 GGGAGGUG m7b (m7b->m6b) -0.21 no TS 2.28
hsa-miR-3917 gatcaccTCCGAGaaggcc
0 GCUCGGAC m6b Disrupted -0.204 no TS 0.01
hsa-miR-4257 gatcACCTCTGagaaggcc
0 CCAGAGGU m7b Created no TS -0.314 -4.58
hsa-miR-4330 gatcaccTCTGAGaaggcc
0 CCUCAGAU m6b Created no TS -0.087 -5.39

Mutation Mutation ID Sample Name Cancer Type
chr3:g.9765970C>A ICGC_1311395 TCGA-AX-A0J0-01A-11D-A117-09 UterineCorpusEndometrioidCarcinoma(TCGA,US)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1273d ctATGGGTTCtgtgaccac
0 GAACCCAU m8a (m8a->m7a) -0.154 -0.327 0.01

Mutation Mutation ID Sample Name Cancer Type
chr3:g.9765974G>C cosmic_v64_1474872 Serous Ovarian
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3545-5p gggttctgtGACCACTgct
0 UAGUGGUC m7b (m7b->m6c) -0.189 no TS -0.01
hsa-miR-542-3p gggttCTGTCACcactgct
0 UGUGACAG m7b Created no TS -0.174 -5.97
hsa-miR-5587-5p gggttctGTGACCActgct
0 AUGGUCAC m7b Disrupted -0.174 no TS No effect
hsa-miR-3545-5p gggttctgtGACCACTgct
0 UAGUGGUC m7b (m7b->m6c) -0.189000 no TS -0.010000
hsa-miR-542-3p gggttCTGTCACcactgct
0 UGUGACAG m7b Created no TS -0.174000 -5.970000
hsa-miR-5587-5p gggttctGTGACCActgct
0 AUGGUCAC m7b Disrupted -0.174000 no TS No effect

Mutation Mutation ID Sample Name Cancer Type
chr3:g.9766007C>T ICGC_ssm_v3_12148 BN28T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-149-3p gatgaCCCTCCCctagtca
0 AGGGAGGG m7b Disrupted -0.192 no TS 0.01
hsa-miR-3202 gatgaCCCTTCCctagtca
0 UGGAAGGG m7b Created no TS -0.162 No effect
hsa-miR-4728-5p gatgaCCCTCCCctagtca
0 UGGGAGGG m7b Disrupted -0.21 no TS No effect
hsa-miR-4747-5p gatgacCCTTCCCTagtca
0 AGGGAAGG m8a Created no TS -0.153 No effect
hsa-miR-5196-5p gatgacCCTTCCCTagtca
0 AGGGAAGG m8a Created no TS -0.135 No effect
hsa-miR-5584-5p gatgacccTTCCCTagtca
0 CAGGGAAA m6b Created -0.069 -0.126 0.15

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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