SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_002531 |
---|---|
Gene Symbol: | NTSR1 |
Description: | Homo sapiens neurotensin receptor 1 (high affinity) (NTSR1), mRNA. |
Gene Location: | chr20(+):61340188-61394123 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr20:g.62760279C>T | COSN1252009 | HCC123T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4497 |
tgtgcgcCCCGGAacgtgt |
0 | CUCCGGGA | m6b | Disrupted | 0.000000 | -0.407000 | No effect | |
hsa-miR-4685-5p |
tgtgcGCCCTGGaacgtgt |
0 | CCCAGGGC | m7b | Created | -0.015000 | -0.014000 |
0.070000 |
|
hsa-miR-5090 |
tgtgcGCCCCGGaacgtgt |
0 | CCGGGGCA | m7a | Disrupted | NA | NA | No effect | |
hsa-miR-4497 |
tgtgcgcCCCGGAacgtgt |
0 | CUCCGGGA | m6b | Disrupted | 0.000000 | -0.407000 | No effect | |
hsa-miR-4685-5p |
tgtgcGCCCTGGaacgtgt |
0 | CCCAGGGC | m7b | Created | -0.015000 | -0.014000 |
0.070000 |
|
hsa-miR-5090 |
tgtgcGCCCCGGaacgtgt |
0 | CCGGGGCA | m7a | Disrupted | NA | NA | No effect | |
hsa-miR-4497 |
tgtgcgcCCCGGAacgtgt |
0 | CUCCGGGA | m6b | Disrupted | 0 | -0.407 | No effect | |
hsa-miR-4685-5p |
tgtgcGCCCTGGaacgtgt |
0 | CCCAGGGC | m7b | Created | -0.015 | -0.014 |
0.07 |
|
hsa-miR-5090 |
tgtgcGCCCCGGaacgtgt |
0 | CCGGGGCA | m7a | Disrupted | NA | NA | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr20:g.62760347G>A | COSN5766583 | BN13T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1247-3p |
cccaCCCGGGagccttgat |
1 |
CCCCGGGA | m6b | Disrupted | -0.404000 | -0.230000 | No effect | |
hsa-miR-4497 |
cccaCCCGGAagccttgat |
0 | CUCCGGGA | m6b | Created | 0.000000 | 0.000000 |
-0.440000 |
|
hsa-miR-4532 |
cccaCCCGGGagccttgat |
1 |
CCCCGGGG | m6b | Disrupted | -0.186000 | no TS |
1.150000 |
|
hsa-miR-1247-3p |
cccaCCCGGGagccttgat |
1 |
CCCCGGGA | m6b | Disrupted | -0.404000 | -0.230000 | No effect | |
hsa-miR-4497 |
cccaCCCGGAagccttgat |
0 | CUCCGGGA | m6b | Created | 0.000000 | 0.000000 |
-0.440000 |
|
hsa-miR-4532 |
cccaCCCGGGagccttgat |
1 |
CCCCGGGG | m6b | Disrupted | -0.186000 | no TS |
1.150000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr20:g.62760713G>A | COSN14667226 | 8051715 | [pancreas][NS][carcinoid-endocrine_tumour][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr20:g.62760886G>A | COSN4971339 | SS6003311 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3960 |
accaccctCGCCGCaggca |
1 |
GGCGGCGG | m6b | Disrupted | -0.169000 | no TS |
0.620000 |
|
hsa-miR-4285 |
accaccCTCGCCGCaggca |
1 |
GCGGCGAG | m8a | Disrupted | -0.143000 | no TS |
0.590000 |
|
hsa-miR-4710 |
accacCCTCACCgcaggca |
2 |
GGGUGAGG | m7b | Created | -0.106000 | -0.183000 |
-0.200000 |
|
hsa-miR-4746-3p |
accaccctCACCGCaggca |
1 |
AGCGGUGC | m6b | Created | -0.091000 | -0.209000 |
-7.010000 |
|
hsa-miR-3960 |
accaccctCGCCGCaggca |
1 |
GGCGGCGG | m6b | Disrupted | -0.169000 | no TS |
0.620000 |
|
hsa-miR-4285 |
accaccCTCGCCGCaggca |
1 |
GCGGCGAG | m8a | Disrupted | -0.143000 | no TS |
0.590000 |
|
hsa-miR-4710 |
accacCCTCACCgcaggca |
2 |
GGGUGAGG | m7b | Created | -0.106000 | -0.183000 |
-0.200000 |
|
hsa-miR-4746-3p |
accaccctCACCGCaggca |
1 |
AGCGGUGC | m6b | Created | -0.091000 | -0.209000 |
-7.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr20:g.62761112G>T | COSN1252010 | HCC122T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1911-3p |
ggatcagggGCCTGGTctc |
1 |
CACCAGGC | m7b | (m7b->m6c) | -0.292000 | -0.262000 |
0.010000 |
|
hsa-miR-4725-5p |
ggatCAGGGTCctggtctc |
0 | AGACCCUG | m7b | Created | no TS | -0.100000 |
-0.010000 |
|
hsa-miR-504 |
ggatCAGGGTCctggtctc |
0 | AGACCCUG | m7b | Created | no TS | -0.081000 |
-0.140000 |
|
hsa-miR-1911-3p |
ggatcagggGCCTGGTctc |
0 | CACCAGGC | m7b | (m7b->m6c) | -0.292 | -0.262 |
0.01 |
|
hsa-miR-4725-5p |
ggatCAGGGTCctggtctc |
0 | AGACCCUG | m7b | Created | no TS | -0.1 |
-0.01 |
|
hsa-miR-504 |
ggatCAGGGTCctggtctc |
0 | AGACCCUG | m7b | Created | no TS | -0.081 |
-0.14 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr20:g.62761385C>T | COSN7101989 | 8036161 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4504 |
ctcatTTGTCACcttctgg |
2 |
UGUGACAA | m7b | Disrupted | 0.025000 | no TS |
0.900000 |
|
hsa-miR-495 |
ctcaTTTGTTaccttctgg |
0 | AAACAAAC | m6b | Created | no TS | 0.180000 |
-0.540000 |
|
hsa-miR-548ag |
ctcatttgTTACCTTctgg |
0 | AAAGGUAA | m7b | Created | no TS | 0.111000 |
-4.780000 |
|
hsa-miR-548ai |
ctcatttgTTACCTTctgg |
0 | AAAGGUAA | m7b | Created | no TS | 0.092000 |
-3.250000 |
|
hsa-miR-570-5p |
ctcatttgTTACCTTctgg |
0 | AAAGGUAA | m7b | Created | no TS | 0.092000 |
-3.250000 |
|
hsa-miR-7-1-3p |
ctcATTTGTTaccttctgg |
0 | CAACAAAU | m7b | (m6b->m7b) | no TS | 0.227000 |
-1.700000 |
|
hsa-miR-7-2-3p |
ctcATTTGTTaccttctgg |
0 | CAACAAAU | m7b | (m6b->m7b) | no TS | 0.237000 |
-6.214000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr20:g.62761891C>T | COSN9147139 | AOCS-147-1-1 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-345-5p |
cagggGAGTCAGgcctatt |
3 |
GCUGACUC | m7b | Disrupted | 0.028000 | no TS |
0.010000 |
|
hsa-miR-4764-3p |
caggGGAGTTAggcctatt |
0 | UUAACUCC | m7b | Created | no TS | 0.050000 |
-1.100000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr20:g.62761947C>A | COSN1252011 | HCC76T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1254 |
ggtcatcagCCAGGCagcc |
0 | AGCCUGGA | m6b | Disrupted | -0.259000 | -0.199000 | No effect | |
hsa-miR-214-5p |
ggtcatcaGACAGGCAgcc |
0 | UGCCUGUC | m8a | Created | no TS | -0.177000 |
-2.920000 |
|
hsa-miR-3064-5p |
ggtcatCAGCCAGgcagcc |
2 |
UCUGGCUG | m7b | Disrupted | -0.177000 | -0.133000 |
0.040000 |
|
hsa-miR-3120-5p |
ggtcatCAGACAGGcagcc |
3 |
CCUGUCUG | m8a | Created | -0.453000 | -0.479000 |
-0.030000 |
|
hsa-miR-4421 |
ggtcatcAGACAGGcagcc |
2 |
ACCUGUCU | m7b | Created | -0.008000 | -0.029000 | No effect | |
hsa-miR-4502 |
ggTCATCAGCcaggcagcc |
1 |
GCUGAUGA | m8a | (m8a->m7a) | 0.061000 | -0.010000 |
-1.400000 |
|
hsa-miR-5699 |
ggtcatcAGACAGGcagcc |
2 |
UCCUGUCU | m7b | Created | -0.008000 | -0.019000 | No effect | |
hsa-miR-1254 |
ggtcatcagCCAGGCagcc |
0 | AGCCUGGA | m6b | Disrupted | -0.259 | -0.199 | No effect | |
hsa-miR-214-5p |
ggtcatcaGACAGGCAgcc |
0 | UGCCUGUC | m8a | Created | no TS | -0.177 |
-2.92 |
|
hsa-miR-3064-5p |
ggtcatCAGCCAGgcagcc |
2 |
UCUGGCUG | m7b | Disrupted | -0.177 | -0.133 |
0.04 |
|
hsa-miR-3120-5p |
ggtcatCAGACAGGcagcc |
0 | CCUGUCUG | m8a | Created | -0.453 | -0.479 |
-0.03 |
|
hsa-miR-4421 |
ggtcatcAGACAGGcagcc |
0 | ACCUGUCU | m7b | Created | -0.008 | -0.029 | No effect | |
hsa-miR-4502 |
ggTCATCAGCcaggcagcc |
0 | GCUGAUGA | m8a | (m8a->m7a) | 0.061 | -0.01 |
-1.4 |
|
hsa-miR-5699 |
ggtcatcAGACAGGcagcc |
0 | UCCUGUCU | m7b | Created | -0.008 | -0.019 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr20:g.62762415T>C | COSN8002612 | PCSI_0083_Pa_P_526 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1471 |
cggtagACGCGGGgtctct |
0 | GCCCGCGU | m7b | Created | no TS | -0.266000 | No effect | |
hsa-miR-662 |
cggtagACGTGGGgtctct |
0 | UCCCACGU | m7b | Disrupted | -0.162000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr20:g.62762434T>G | COSN9147140 | AOCS-167-16-X | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3943 |
ggggcGGGGGCTgtggctg |
2 |
UAGCCCCC | m7b | Created | -0.144000 | -0.300000 |
0.010000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
62760280 | rs74420799 | G | G |
hsa-miR-4497 hsa-miR-6784-5p |
0 |
cgcCCCGGAAcgt cGCCCCGGAacgt |
Disrupted Disrupted |
N N |
No Change No Change |
A |
hsa-miR-3180 hsa-miR-3180-3p hsa-miR-3196 hsa-miR-4314 hsa-miR-4667-5p hsa-miR-4700-5p hsa-miR-637 hsa-miR-6816-5p hsa-miR-7155-5p hsa-miR-8089 |
0 |
CGCCCCAgaacgt CGCCCCAgaacgt CGCCCCAgaacgt cgcCCCAGAAcgt cgCCCCAGAacgt cgCCCCAGAacgt cgCCCCAGAacgt CGCCCCAgaacgt cgCCCCAGAacgt cgCCCCAGAacgt |
Created Created Created Created Created Created Created Created Created Created |
N N N N N N N N N N |
No Change No Change No Change No Change No Change No Change No Change No Change No Change No Change |
|||
62761413 | rs143151412 | C | C |
hsa-miR-6089 hsa-miR-6762-5p hsa-miR-6784-5p hsa-miR-6845-5p |
1 2 2 2 |
tggcccCGGCCTC TGGCCCCggcctc tgGCCCCGGcctc TGGCCCCggcctc |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
-0.042 0.002 -0.114 0.02 |
T |
hsa-miR-3918 hsa-miR-4685-5p hsa-miR-6837-5p hsa-miR-6895-5p |
1 2 2 2 |
tGGCCCTGgcctc tgGCCCTGGcctc tgGCCCTGGcctc TGGCCCTggcctc |
Created Created Created Created |
N N N N |
-0.031 -0.019 -0.057 0.032 |
|||
62761638 | rs4596034 | A | A |
hsa-miR-4292 hsa-miR-4308 hsa-miR-4446-5p hsa-miR-4755-5p hsa-miR-486-3p hsa-miR-5006-3p hsa-miR-670-5p hsa-miR-6791-5p hsa-miR-6852-5p |
1 1 6 6 1 9 1 1 1 |
tgcCCCAGGGAaa tgccCCAGGGAaa tgccccAGGGAAA tgccccAGGGAAA TGCCCCAgggaaa tgccccAGGGAAA tgcccCAGGGAAa tgcCCCAGGGAaa tgCCCCAGGgaaa |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N N |
-0.134 -0.036 0.152 0.06 -0.032 0.06 0.003 -0.155 -0.07 |
C |
hsa-miR-1247-3p hsa-miR-4532 |
1 1 |
tgccCCCGGGAaa tgcCCCCGGGAaa |
Created Created |
N N |
-0.105 -0.295 |
|||
62762088 | rs5842395 | - | A |
hsa-miR-378a-3p hsa-miR-378b hsa-miR-378c hsa-miR-378d hsa-miR-378e hsa-miR-378f hsa-miR-378h hsa-miR-378i hsa-miR-422a hsa-miR-4638-3p hsa-miR-518c-5p hsa-miR-6790-3p hsa-miR-6821-3p |
1 1 1 1 1 1 1 1 1 1 2 2 2 |
GTCCAGAggtcag GTCCAGAggtcag GTCCAGAggtcag GTCCAGAggtcag GTCCAGAggtcag GTCCAGAggtcag GTCCAGAggtcag GTCCAGAggtcag GTCCAGAggtcag GTCCAGAggtcag gTCCAGAGgtcag gtccaGAGGTCAg gtccAGAGGTCAg |
Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown |
N N N N N N N N N N N N N |
-0.045 -0.055 -0.041 -0.041 -0.041 -0.048 -0.045 -0.041 -0.045 -0.111 -0.015 -0.063 -0.152 |
- |
hsa-miR-3690 hsa-miR-4308 hsa-miR-4725-5p hsa-miR-4750-3p hsa-miR-504-5p |
1 2 2 2 2 |
GTCCAGGgtcag gTCCAGGGtcag gtcCAGGGTCAg gtccaGGGTCAG gtcCAGGGTCAg |
Unknown Unknown Unknown Unknown Unknown |
N N N N N |
-0.086 -0.074 -0.226 -0.127 -0.195 |
|||
62762414 | rs150152720 | G | G |
hsa-miR-662 |
0 |
gtagACGTGGGgt |
Disrupted |
N |
-0.162 |
A |
hsa-miR-3618 hsa-miR-934 |
1 1 |
GTAGACAtggggt GTAGACAtggggt |
Created Created |
N N |
-0.056 -0.069 |