SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_002531
Gene Symbol: NTSR1
Description: Homo sapiens neurotensin receptor 1 (high affinity) (NTSR1), mRNA.
Gene Location: chr20(+):61340188-61394123
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr20:g.62760279C>T COSN1252009 HCC123T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4497 tgtgcgcCCCGGAacgtgt
0 CUCCGGGA m6b Disrupted 0.000000 -0.407000 No effect
hsa-miR-4685-5p tgtgcGCCCTGGaacgtgt
0 CCCAGGGC m7b Created -0.015000 -0.014000 0.070000
hsa-miR-5090 tgtgcGCCCCGGaacgtgt
0 CCGGGGCA m7a Disrupted NA NA No effect
hsa-miR-4497 tgtgcgcCCCGGAacgtgt
0 CUCCGGGA m6b Disrupted 0.000000 -0.407000 No effect
hsa-miR-4685-5p tgtgcGCCCTGGaacgtgt
0 CCCAGGGC m7b Created -0.015000 -0.014000 0.070000
hsa-miR-5090 tgtgcGCCCCGGaacgtgt
0 CCGGGGCA m7a Disrupted NA NA No effect
hsa-miR-4497 tgtgcgcCCCGGAacgtgt
0 CUCCGGGA m6b Disrupted 0 -0.407 No effect
hsa-miR-4685-5p tgtgcGCCCTGGaacgtgt
0 CCCAGGGC m7b Created -0.015 -0.014 0.07
hsa-miR-5090 tgtgcGCCCCGGaacgtgt
0 CCGGGGCA m7a Disrupted NA NA No effect

Mutation Mutation ID Sample Name Cancer Type
chr20:g.62760347G>A COSN5766583 BN13T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1247-3p cccaCCCGGGagccttgat
1
CCCCGGGA m6b Disrupted -0.404000 -0.230000 No effect
hsa-miR-4497 cccaCCCGGAagccttgat
0 CUCCGGGA m6b Created 0.000000 0.000000 -0.440000
hsa-miR-4532 cccaCCCGGGagccttgat
1
CCCCGGGG m6b Disrupted -0.186000 no TS 1.150000
hsa-miR-1247-3p cccaCCCGGGagccttgat
1
CCCCGGGA m6b Disrupted -0.404000 -0.230000 No effect
hsa-miR-4497 cccaCCCGGAagccttgat
0 CUCCGGGA m6b Created 0.000000 0.000000 -0.440000
hsa-miR-4532 cccaCCCGGGagccttgat
1
CCCCGGGG m6b Disrupted -0.186000 no TS 1.150000


Mutation Mutation ID Sample Name Cancer Type
chr20:g.62760713G>A COSN14667226 8051715 [pancreas][NS][carcinoid-endocrine_tumour][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr20:g.62760886G>A COSN4971339 SS6003311 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3960 accaccctCGCCGCaggca
1
GGCGGCGG m6b Disrupted -0.169000 no TS 0.620000
hsa-miR-4285 accaccCTCGCCGCaggca
1
GCGGCGAG m8a Disrupted -0.143000 no TS 0.590000
hsa-miR-4710 accacCCTCACCgcaggca
2
GGGUGAGG m7b Created -0.106000 -0.183000 -0.200000
hsa-miR-4746-3p accaccctCACCGCaggca
1
AGCGGUGC m6b Created -0.091000 -0.209000 -7.010000
hsa-miR-3960 accaccctCGCCGCaggca
1
GGCGGCGG m6b Disrupted -0.169000 no TS 0.620000
hsa-miR-4285 accaccCTCGCCGCaggca
1
GCGGCGAG m8a Disrupted -0.143000 no TS 0.590000
hsa-miR-4710 accacCCTCACCgcaggca
2
GGGUGAGG m7b Created -0.106000 -0.183000 -0.200000
hsa-miR-4746-3p accaccctCACCGCaggca
1
AGCGGUGC m6b Created -0.091000 -0.209000 -7.010000

Mutation Mutation ID Sample Name Cancer Type
chr20:g.62761112G>T COSN1252010 HCC122T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1911-3p ggatcagggGCCTGGTctc
1
CACCAGGC m7b (m7b->m6c) -0.292000 -0.262000 0.010000
hsa-miR-4725-5p ggatCAGGGTCctggtctc
0 AGACCCUG m7b Created no TS -0.100000 -0.010000
hsa-miR-504 ggatCAGGGTCctggtctc
0 AGACCCUG m7b Created no TS -0.081000 -0.140000
hsa-miR-1911-3p ggatcagggGCCTGGTctc
0 CACCAGGC m7b (m7b->m6c) -0.292 -0.262 0.01
hsa-miR-4725-5p ggatCAGGGTCctggtctc
0 AGACCCUG m7b Created no TS -0.1 -0.01
hsa-miR-504 ggatCAGGGTCctggtctc
0 AGACCCUG m7b Created no TS -0.081 -0.14

Mutation Mutation ID Sample Name Cancer Type
chr20:g.62761385C>T COSN7101989 8036161 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4504 ctcatTTGTCACcttctgg
2
UGUGACAA m7b Disrupted 0.025000 no TS 0.900000
hsa-miR-495 ctcaTTTGTTaccttctgg
0 AAACAAAC m6b Created no TS 0.180000 -0.540000
hsa-miR-548ag ctcatttgTTACCTTctgg
0 AAAGGUAA m7b Created no TS 0.111000 -4.780000
hsa-miR-548ai ctcatttgTTACCTTctgg
0 AAAGGUAA m7b Created no TS 0.092000 -3.250000
hsa-miR-570-5p ctcatttgTTACCTTctgg
0 AAAGGUAA m7b Created no TS 0.092000 -3.250000
hsa-miR-7-1-3p ctcATTTGTTaccttctgg
0 CAACAAAU m7b (m6b->m7b) no TS 0.227000 -1.700000
hsa-miR-7-2-3p ctcATTTGTTaccttctgg
0 CAACAAAU m7b (m6b->m7b) no TS 0.237000 -6.214000

Mutation Mutation ID Sample Name Cancer Type
chr20:g.62761891C>T COSN9147139 AOCS-147-1-1 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-345-5p cagggGAGTCAGgcctatt
3
GCUGACUC m7b Disrupted 0.028000 no TS 0.010000
hsa-miR-4764-3p caggGGAGTTAggcctatt
0 UUAACUCC m7b Created no TS 0.050000 -1.100000

Mutation Mutation ID Sample Name Cancer Type
chr20:g.62761947C>A COSN1252011 HCC76T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1254 ggtcatcagCCAGGCagcc
0 AGCCUGGA m6b Disrupted -0.259000 -0.199000 No effect
hsa-miR-214-5p ggtcatcaGACAGGCAgcc
0 UGCCUGUC m8a Created no TS -0.177000 -2.920000
hsa-miR-3064-5p ggtcatCAGCCAGgcagcc
2
UCUGGCUG m7b Disrupted -0.177000 -0.133000 0.040000
hsa-miR-3120-5p ggtcatCAGACAGGcagcc
3
CCUGUCUG m8a Created -0.453000 -0.479000 -0.030000
hsa-miR-4421 ggtcatcAGACAGGcagcc
2
ACCUGUCU m7b Created -0.008000 -0.029000 No effect
hsa-miR-4502 ggTCATCAGCcaggcagcc
1
GCUGAUGA m8a (m8a->m7a) 0.061000 -0.010000 -1.400000
hsa-miR-5699 ggtcatcAGACAGGcagcc
2
UCCUGUCU m7b Created -0.008000 -0.019000 No effect
hsa-miR-1254 ggtcatcagCCAGGCagcc
0 AGCCUGGA m6b Disrupted -0.259 -0.199 No effect
hsa-miR-214-5p ggtcatcaGACAGGCAgcc
0 UGCCUGUC m8a Created no TS -0.177 -2.92
hsa-miR-3064-5p ggtcatCAGCCAGgcagcc
2
UCUGGCUG m7b Disrupted -0.177 -0.133 0.04
hsa-miR-3120-5p ggtcatCAGACAGGcagcc
0 CCUGUCUG m8a Created -0.453 -0.479 -0.03
hsa-miR-4421 ggtcatcAGACAGGcagcc
0 ACCUGUCU m7b Created -0.008 -0.029 No effect
hsa-miR-4502 ggTCATCAGCcaggcagcc
0 GCUGAUGA m8a (m8a->m7a) 0.061 -0.01 -1.4
hsa-miR-5699 ggtcatcAGACAGGcagcc
0 UCCUGUCU m7b Created -0.008 -0.019 No effect

Mutation Mutation ID Sample Name Cancer Type
chr20:g.62762415T>C COSN8002612 PCSI_0083_Pa_P_526 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1471 cggtagACGCGGGgtctct
0 GCCCGCGU m7b Created no TS -0.266000 No effect
hsa-miR-662 cggtagACGTGGGgtctct
0 UCCCACGU m7b Disrupted -0.162000 no TS No effect

Mutation Mutation ID Sample Name Cancer Type
chr20:g.62762434T>G COSN9147140 AOCS-167-16-X [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3943 ggggcGGGGGCTgtggctg
2
UAGCCCCC m7b Created -0.144000 -0.300000 0.010000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
62760280 rs74420799 G G hsa-miR-4497
hsa-miR-6784-5p
0 cgcCCCGGAAcgt
cGCCCCGGAacgt
Disrupted
Disrupted
N
N
No Change
No Change
A hsa-miR-3180
hsa-miR-3180-3p
hsa-miR-3196
hsa-miR-4314
hsa-miR-4667-5p
hsa-miR-4700-5p
hsa-miR-637
hsa-miR-6816-5p
hsa-miR-7155-5p
hsa-miR-8089
0 CGCCCCAgaacgt
CGCCCCAgaacgt
CGCCCCAgaacgt
cgcCCCAGAAcgt
cgCCCCAGAacgt
cgCCCCAGAacgt
cgCCCCAGAacgt
CGCCCCAgaacgt
cgCCCCAGAacgt
cgCCCCAGAacgt
Created
Created
Created
Created
Created
Created
Created
Created
Created
Created
N
N
N
N
N
N
N
N
N
N
No Change
No Change
No Change
No Change
No Change
No Change
No Change
No Change
No Change
No Change
62761413 rs143151412 C C hsa-miR-6089
hsa-miR-6762-5p
hsa-miR-6784-5p
hsa-miR-6845-5p
1
2
2
2
tggcccCGGCCTC
TGGCCCCggcctc
tgGCCCCGGcctc
TGGCCCCggcctc
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
-0.042
0.002
-0.114
0.02
T hsa-miR-3918
hsa-miR-4685-5p
hsa-miR-6837-5p
hsa-miR-6895-5p
1
2
2
2
tGGCCCTGgcctc
tgGCCCTGGcctc
tgGCCCTGGcctc
TGGCCCTggcctc
Created
Created
Created
Created
N
N
N
N
-0.031
-0.019
-0.057
0.032
62761638 rs4596034 A A hsa-miR-4292
hsa-miR-4308
hsa-miR-4446-5p
hsa-miR-4755-5p
hsa-miR-486-3p
hsa-miR-5006-3p
hsa-miR-670-5p
hsa-miR-6791-5p
hsa-miR-6852-5p
1
1
6
6
1
9
1
1
1
tgcCCCAGGGAaa
tgccCCAGGGAaa
tgccccAGGGAAA
tgccccAGGGAAA
TGCCCCAgggaaa
tgccccAGGGAAA
tgcccCAGGGAAa
tgcCCCAGGGAaa
tgCCCCAGGgaaa
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
N
N
N
N
N
-0.134
-0.036
0.152
0.06
-0.032
0.06
0.003
-0.155
-0.07
C hsa-miR-1247-3p
hsa-miR-4532
1
1
tgccCCCGGGAaa
tgcCCCCGGGAaa
Created
Created
N
N
-0.105
-0.295
62762088 rs5842395 - A hsa-miR-378a-3p
hsa-miR-378b
hsa-miR-378c
hsa-miR-378d
hsa-miR-378e
hsa-miR-378f
hsa-miR-378h
hsa-miR-378i
hsa-miR-422a
hsa-miR-4638-3p
hsa-miR-518c-5p
hsa-miR-6790-3p
hsa-miR-6821-3p
1
1
1
1
1
1
1
1
1
1
2
2
2
GTCCAGAggtcag
GTCCAGAggtcag
GTCCAGAggtcag
GTCCAGAggtcag
GTCCAGAggtcag
GTCCAGAggtcag
GTCCAGAggtcag
GTCCAGAggtcag
GTCCAGAggtcag
GTCCAGAggtcag
gTCCAGAGgtcag
gtccaGAGGTCAg
gtccAGAGGTCAg
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
N
N
N
N
N
N
N
N
N
N
N
N
N
-0.045
-0.055
-0.041
-0.041
-0.041
-0.048
-0.045
-0.041
-0.045
-0.111
-0.015
-0.063
-0.152
- hsa-miR-3690
hsa-miR-4308
hsa-miR-4725-5p
hsa-miR-4750-3p
hsa-miR-504-5p
1
2
2
2
2
GTCCAGGgtcag
gTCCAGGGtcag
gtcCAGGGTCAg
gtccaGGGTCAG
gtcCAGGGTCAg
Unknown
Unknown
Unknown
Unknown
Unknown
N
N
N
N
N
-0.086
-0.074
-0.226
-0.127
-0.195
62762414 rs150152720 G G hsa-miR-662
0 gtagACGTGGGgt
Disrupted
N
-0.162
A hsa-miR-3618
hsa-miR-934
1
1
GTAGACAtggggt
GTAGACAtggggt
Created
Created
N
N
-0.056
-0.069

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