SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_003822 |
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Gene Symbol: | NR5A2 |
Description: | Homo sapiens nuclear receptor subfamily 5, group A, member 2 (NR5A2), transcript variant 2, mRNA. |
Gene Location: | chr1(+):199996769-200146550 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr1:g.200174397A>G | COSN7983180 | PCSI_0083_Pa_P_526 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4643 |
aaatgATGTGTCagggtat |
0 | GACACAUG | m7a | Created | -0.167000 | -0.167000 |
-0.070000 |
|
hsa-miR-4732-3p |
aaatgatgtGTCAGGGtat |
15 |
GCCCUGAC | m7b | (m6c->m7b) | -0.039000 | -0.344000 |
-0.230000 |
|
hsa-miR-642a-3p |
aaatgATGTGTCagggtat |
1 |
AGACACAU | m7b | Created | -0.020000 | -0.298000 |
-0.030000 |
|
hsa-miR-642b-3p |
aaatgATGTGTCagggtat |
1 |
AGACACAU | m7b | Created | -0.020000 | -0.298000 |
-0.020000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr1:g.200176103G>C | COSN7197747 | 8061178 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3616-5p |
cattCACTTCATtaaatgt |
0 | AUGAAGUG | m8a | Created | no TS | -0.118000 |
-1.520000 |
|
hsa-miR-4795-5p |
cattCACTTCattaaatgt |
0 | AGAAGUGG | m6b | Created | no TS | -0.033000 |
-1.890000 |
|
hsa-miR-573 |
cattCACTTCAttaaatgt |
0 | CUGAAGUG | m7b | Created | no TS | -0.109000 |
-5.790000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.200176119A>G | COSN5363411 | RK272_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4699-5p |
tgtctgtaAATCTTCatca |
0 | AGAAGAUU | m7b | Disrupted | 0.030000 | 0.037000 |
1.000000 |
hsa-miR-600 |
tgtCTGTAAGTcttcatca |
0 | ACUUACAG | m8a | Created | no TS | -0.031000 |
0.010000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
200175377 | rs35324783 | - | - |
hsa-miR-2110 hsa-miR-3150a-3p hsa-miR-4271 hsa-miR-450a-2-3p hsa-miR-4699-5p hsa-miR-4725-3p hsa-miR-6763-5p hsa-miR-6780b-5p hsa-miR-6810-5p hsa-miR-6857-5p |
17 21 15 21 10 15 21 15 21 21 |
aaatcTTCCCCAA aaatctTCCCCAA aaatCTTCCCCAa aaatctTCCCCAA aAATCTTCcccaa aaatCTTCCCCAa aaatctTCCCCAA aaatCTTCCCCAa aaatctTCCCCAA aaatctTCCCCAA |
Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown |
N N N N N N N N N N |
-0.07 -0.048 -0.071 -0.105 -0.007 -0.068 -0.048 -0.072 -0.062 -0.057 |
C |
hsa-miR-1275 hsa-miR-4525 hsa-miR-4665-5p hsa-miR-4723-5p hsa-miR-5010-5p hsa-miR-5698 hsa-miR-625-5p hsa-miR-6870-5p hsa-miR-7111-5p |
21 21 21 21 21 21 17 21 21 |
aaatctTCCCCCAa aaatctTCCCCCAa aaatctTCCCCCAa aaatctTCCCCCAa aaatctTCCCCCAa aaatctTCCCCCAa aaatcTTCCCCCAa aaatctTCCCCCAa aaatctTCCCCCAa |
Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown |
N N N N N N N N N |
-0.221 -0.11 -0.242 -0.102 -0.11 -0.106 -0.176 -0.096 -0.099 |
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200176405 | rs2246209 | A | |||||||
A |
hsa-miR-4699-5p hsa-miR-8060 |
0 |
ATCTTCAtggctc atCTTCATGgctc |
Disrupted Disrupted |
N N |
0.044 -0.032 |