SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_022150
Gene Symbol: NPVF
Description: Homo sapiens neuropeptide VF precursor (NPVF), mRNA.
Gene Location: chr7(-):25264190-25268105
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr7:g.25224797A>T COSN1347692 HCC6T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4775 taataaaaAAAATTAAaca
 0 UUAAUUUU m8a Disrupted -0.042000 0.005000 1.890000
hsa-miR-590-3p taataaaaAAAATTAaaca
 0 UAAUUUUA m7a Disrupted 0.104000 0.053000 No effect
hsa-miR-944 taataaaAATAATTaaaca
 0 AAAUUAUU m7b Created no TS -0.087000 -4.450000
hsa-miR-4775 taataaaaAAAATTAAaca
 0 UUAAUUUU m8a Disrupted -0.042 0.005 1.89
hsa-miR-590-3p taataaaaAAAATTAaaca
 0 UAAUUUUA m7a Disrupted 0.104 0.053 No effect
hsa-miR-944 taataaaAATAATTaaaca
 0 AAAUUAUU m7b Created no TS -0.087 -4.45

Mutation Mutation ID Sample Name Cancer Type
chr7:g.25224851A>G COSN5654823 RK090_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3909 agacAGAGGACcctcctca
 0 UGUCCUCU m7b Disrupted -0.141000 no TS -0.200000

Mutation Mutation ID Sample Name Cancer Type
chr7:g.25225070T>G cosmic_v64_1675361 Melanoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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