SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_022162
Gene Symbol: NOD2
Description: Homo sapiens nucleotide-binding oligomerization domain containing 2 (NOD2), mRNA.
Gene Location: chr16(+):50731049-50766987
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Browse Pathways

Somatic mutations that impact miRNA target sites




Mutation Mutation ID Sample Name Cancer Type
chr16:g.50732157G>A COSN1187540 HCC23T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr16:g.50732373A>G COSN8501054 AOCS-168-1-8 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-146a-3p aaaTTCAGAGtattagtga
0 CCUCUGAA m7b (m6b->m7b) no TS -0.159000 -5.230000
hsa-miR-3664-5p aaattCAGAGTattagtga
0 AACUCUGU m6b Created no TS -0.096000 -4.830000
hsa-miR-4714-5p aaatTCAGAGTattagtga
0 AACUCUGA m7b Created no TS -0.279000 -4.210000
hsa-miR-4778-5p aaattCAGAATattagtga
5
AAUUCUGU m6b Disrupted -0.026000 no TS 1.340000

Mutation Mutation ID Sample Name Cancer Type
chr16:g.50732453C>T COSN6086052 RK308_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4771 acaccttAGTCTGCcctcc
0 AGCAGACU m7b Created no TS -0.117000 -0.193000

Mutation Mutation ID Sample Name Cancer Type
chr16:g.50733043A>G COSN1699601 RK086_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4699-3p atgctGTAAATaatcagag
7
AAUUUACU m6b Disrupted -0.006000 no TS 4.800000
hsa-miR-600 atgCTGTAAGTaatcagag
0 ACUUACAG m8a Created no TS -0.180000 -3.940000
hsa-miR-4699-3p atgctGTAAATaatcagag
7
AAUUUACU m6b Disrupted -0.006 no TS 4.8
hsa-miR-600 atgCTGTAAGTaatcagag
0 ACUUACAG m8a Created no TS -0.18 -3.94

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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