SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_022162 |
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Gene Symbol: | NOD2 |
Description: | Homo sapiens nucleotide-binding oligomerization domain containing 2 (NOD2), mRNA. |
Gene Location: | chr16(+):50731049-50766987 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr16:g.50732157G>A | COSN1187540 | HCC23T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr16:g.50732373A>G | COSN8501054 | AOCS-168-1-8 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-146a-3p |
aaaTTCAGAGtattagtga |
0 | CCUCUGAA | m7b | (m6b->m7b) | no TS | -0.159000 |
-5.230000 |
hsa-miR-3664-5p |
aaattCAGAGTattagtga |
0 | AACUCUGU | m6b | Created | no TS | -0.096000 |
-4.830000 |
hsa-miR-4714-5p |
aaatTCAGAGTattagtga |
0 | AACUCUGA | m7b | Created | no TS | -0.279000 |
-4.210000 |
hsa-miR-4778-5p |
aaattCAGAATattagtga |
5 |
AAUUCUGU | m6b | Disrupted | -0.026000 | no TS |
1.340000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr16:g.50732453C>T | COSN6086052 | RK308_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4771 |
acaccttAGTCTGCcctcc |
0 | AGCAGACU | m7b | Created | no TS | -0.117000 |
-0.193000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr16:g.50733043A>G | COSN1699601 | RK086_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4699-3p |
atgctGTAAATaatcagag |
7 |
AAUUUACU | m6b | Disrupted | -0.006000 | no TS |
4.800000 |
hsa-miR-600 |
atgCTGTAAGTaatcagag |
0 | ACUUACAG | m8a | Created | no TS | -0.180000 |
-3.940000 |
hsa-miR-4699-3p |
atgctGTAAATaatcagag |
7 |
AAUUUACU | m6b | Disrupted | -0.006 | no TS |
4.8 |
hsa-miR-600 |
atgCTGTAAGTaatcagag |
0 | ACUUACAG | m8a | Created | no TS | -0.18 |
-3.94 |