SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_002508
Gene Symbol: NID1
Description: Homo sapiens nidogen 1 (NID1), mRNA.
Gene Location: chr1(-):236139131-236228481
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.235976299T>A COSN6027823 RK135_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-185-5p aagagTCTCTCCtcttttc
 2
 UGGAGAGA m7b Disrupted -0.132000 no TS No effect
hsa-miR-3150b-3p aagagtcTCTCCTCttttc
 2
 UGAGGAGA m7b Disrupted -0.245000 -0.117000 No effect
hsa-miR-3672 aagAGTCTCAcctcttttc
 1
 AUGAGACU m7b (m6c->m7b) -0.235000 -0.315000 No effect
hsa-miR-4306 aagagTCTCTCCtcttttc
 2
 UGGAGAGA m7b Disrupted -0.085000 no TS No effect
hsa-miR-4644 aagagTCTCTCCtcttttc
 2
 UGGAGAGA m7b Disrupted -0.113000 no TS No effect
hsa-miR-4784 aagagtcTCTCCTCttttc
 2
 UGAGGAGA m7b Disrupted -0.240000 -0.121000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr1:g.235976335A>C COSN6027824 RK081_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-105-5p acatggaaGCATTTGcctg
 2
 UCAAAUGC m7b Created -0.103000 -0.172000 -0.530000
hsa-miR-2115-5p acaTGGAAGCatttgcctg
 0 AGCUUCCA m7b (m6c->m7b) no TS -0.321000 -2.640000

Mutation Mutation ID Sample Name Cancer Type
chr1:g.235977351A>G COSN1436718 RK027_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-338-5p ttcttTATTGTagtcctat
 0 AACAAUAU m6b Created no TS 0.026000 No effect
hsa-miR-369-3p ttcttTATTATagtcctat
 1
 AAUAAUAC m6b Disrupted 0.061000 no TS -0.010000
hsa-miR-374a-5p ttcttTATTATAgtcctat
 3
 UUAUAAUA m7b Disrupted 0.092000 0.088000 No effect
hsa-miR-374b-5p ttcttTATTATAgtcctat
 3
 AUAUAAUA m7b Disrupted 0.110000 0.088000 No effect
hsa-miR-5692b ttcttTATTATagtcctat
 1
 AAUAAUAU m6b Disrupted 0.071000 no TS 0.040000
hsa-miR-5692c ttcttTATTATagtcctat
 1
 AAUAAUAU m6b Disrupted 0.071000 no TS 0.040000
hsa-miR-338-5p ttcttTATTGTagtcctat
 0 AACAAUAU m6b Created no TS 0.026 No effect
hsa-miR-369-3p ttcttTATTATagtcctat
 0 AAUAAUAC m6b Disrupted 0.061 no TS -0.01
hsa-miR-374a-5p ttcttTATTATAgtcctat
 0 UUAUAAUA m7b Disrupted 0.092 0.088 No effect
hsa-miR-374b-5p ttcttTATTATAgtcctat
 0 AUAUAAUA m7b Disrupted 0.11 0.088 No effect
hsa-miR-5692b ttcttTATTATagtcctat
 0 AAUAAUAU m6b Disrupted 0.071 no TS 0.04
hsa-miR-5692c ttcttTATTATagtcctat
 0 AAUAAUAU m6b Disrupted 0.071 no TS 0.04

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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