SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001005474 |
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Gene Symbol: | NFKBIZ |
Description: | Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta (NFKBIZ), transcript variant 2, mRNA. |
Gene Location: | chr3(+):101546833-101579869 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.101859483A>C | COSN6711213 | RK144_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-5010-3p |
tttctatgACACAAAcata |
2 |
UUUUGUGU | m7b | Created | -0.039000 | -0.176000 |
-0.020000 |
|
hsa-miR-592 |
tttctaTGACACAAacata |
0 | UUGUGUCA | m8a | Created | no TS | -0.410000 |
-0.400000 |
|
hsa-miR-597 |
tttctaTGACACAaacata |
0 | UGUGUCAC | m7a | Created | no TS | -0.174000 | No effect | |
hsa-miR-599 |
tttctatGACACAAacata |
0 | GUUGUGUC | m7b | Created | no TS | -0.377000 |
-0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.101859802C>T | COSN6711214 | RK190_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1915-3p |
gccttagtCCCTGGGagtt |
0 | CCCCAGGG | m7b | Disrupted | -0.378000 | no TS |
0.300000 |
|
hsa-miR-211-3p |
gccttaGTCCCTGggagtt |
2 |
GCAGGGAC | m7b | Disrupted | -0.199000 | no TS |
0.020000 |
|
hsa-miR-4685-5p |
gccttagtCCCTGGGagtt |
0 | CCCAGGGC | m7a | Disrupted | NA | NA | No effect | |
hsa-miR-4726-3p |
gccttagtcCCTGGGagtt |
0 | ACCCAGGU | m6b | Disrupted | -0.134000 | no TS |
0.120000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.101860145A>T | COSN1264171 | HX15T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-330-3p |
ttctcaTGCTTTGaaatta |
5 |
GCAAAGCA | m7b | Created | -0.098000 | -0.261000 |
-0.010000 |
|
hsa-miR-4422 |
ttctcATGCTTTgaaatta |
0 | AAAAGCAU | m7b | Created | -0.059000 | -0.108000 |
0.140000 |
|
hsa-miR-5700 |
ttctcATGCATTgaaatta |
5 |
UAAUGCAU | m7b | Disrupted | -0.041000 | no TS |
0.070000 |
|
hsa-miR-607 |
ttctcatgcTTTGAAatta |
6 |
GUUCAAAU | m6b | Created | -0.022000 | 0.043000 | No effect | |
hsa-miR-330-3p |
ttctcaTGCTTTGaaatta |
0 | GCAAAGCA | m7b | Created | -0.098 | -0.261 |
-0.01 |
|
hsa-miR-4422 |
ttctcATGCTTTgaaatta |
0 | AAAAGCAU | m7b | Created | -0.059 | -0.108 |
0.14 |
|
hsa-miR-5700 |
ttctcATGCATTgaaatta |
5 |
UAAUGCAU | m7b | Disrupted | -0.041 | no TS |
0.07 |
|
hsa-miR-607 |
ttctcatgcTTTGAAatta |
0 | GUUCAAAU | m6b | Created | -0.022 | 0.043 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.101860440A>G | ICGC_72D285AE-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-338-3p |
tctcccaaaATGCTGGgat |
0 | UCCAGCAU | m7b | (m7b->m6c) | -0.137 | no TS |
-0.29 |
|
hsa-miR-4310 |
tctcccaaAATGCTGggat |
0 | GCAGCAUU | m7b | Disrupted | -0.033 | no TS |
0.01 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.101860591A>G | COSN1902056 | RK062_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1305 |
aaagtcagtGTTGAAAcat |
2 |
UUUUCAAC | m7b | (m6c->m7b) | -0.097000 | -0.153000 |
-1.020000 |
|
hsa-miR-141-3p |
aaagtCAGTGTTgaaacat |
0 | UAACACUG | m7b | Created | no TS | -0.146000 |
-4.983000 |
|
hsa-miR-200a-3p |
aaagtCAGTGTTgaaacat |
0 | UAACACUG | m7b | Created | no TS | -0.146000 |
-2.670000 |
|
hsa-miR-200b-3p |
aaagtCAGTATTgaaacat |
1 |
UAAUACUG | m7b | Disrupted | -0.106000 | no TS |
-0.170000 |
|
hsa-miR-200c-3p |
aaagtCAGTATTgaaacat |
1 |
UAAUACUG | m7b | Disrupted | -0.106000 | no TS |
-0.170000 |
|
hsa-miR-421 |
aaagtcagTGTTGAaacat |
2 |
AUCAACAG | m6b | Created | -0.312000 | -0.376000 |
-0.890000 |
|
hsa-miR-429 |
aaagtCAGTATTgaaacat |
1 |
UAAUACUG | m7b | Disrupted | -0.106000 | no TS |
-0.120000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.101860650A>C | COSN8346974 | 0006_CRUK_PC_0006_T3_DNA | [prostate][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-410 |
tgatgttTTATATatatca |
1 |
AAUAUAAC | m6b | Disrupted | -0.066000 | -0.069000 |
1.950000 |
hsa-miR-5011-5p |
tgatgtttTATATATAtca |
1 |
UAUAUAUA | m8a | Disrupted | -0.187000 | -0.019000 | No effect |
hsa-miR-570-3p |
tgaTGTTTTCtatatatca |
0 | CGAAAACA | m7b | (m6b->m7b) | -0.017000 | -0.123000 | No effect |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
101859681 | rs36124512 | - | - |
hsa-miR-19a-5p hsa-miR-19b-1-5p hsa-miR-19b-2-5p hsa-miR-2052 hsa-miR-2113 hsa-miR-33a-3p hsa-miR-4307 hsa-miR-5010-3p hsa-miR-550b-2-5p |
2 2 2 2 2 2 2 2 2 |
ggcaCAAAACAtt ggcaCAAAACAtt ggcaCAAAACAtt ggcaCAAAACAtt gGCACAAAAcatt ggcacaAAACATT ggcacAAAACATt ggCACAAAAcatt GGCACAAaacatt |
Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown |
N N N N N N N N N |
-0.024 -0.024 -0.024 -0.026 -0.244 -0.097 -0.021 -0.039 -0.015 |
G |
hsa-miR-2116-5p hsa-miR-22-5p hsa-miR-4677-5p hsa-miR-578 hsa-miR-581 |
2 2 2 2 2 |
ggcacAAGAACAtt ggcacAAGAACAtt ggcacAAGAACAtt ggcACAAGAAcatt ggCACAAGAacatt |
Unknown Unknown Unknown Unknown Unknown |
N N N N N |
-0.063 -0.075 -0.095 -0.05 -0.115 |
|||
101860181 | rs111417052 | - | T |
hsa-miR-4422 hsa-miR-548e-5p |
0 |
gcATGCTTTtttt gcaTGCTTTTttt |
Unknown Unknown |
N N |
-0.003 -0.003 |
- |