SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_001005474
Gene Symbol: NFKBIZ
Description: Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta (NFKBIZ), transcript variant 2, mRNA.
Gene Location: chr3(+):101546833-101579869
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr3:g.101859483A>C COSN6711213 RK144_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-5010-3p tttctatgACACAAAcata
2
UUUUGUGU m7b Created -0.039000 -0.176000 -0.020000
hsa-miR-592 tttctaTGACACAAacata
0 UUGUGUCA m8a Created no TS -0.410000 -0.400000
hsa-miR-597 tttctaTGACACAaacata
0 UGUGUCAC m7a Created no TS -0.174000 No effect
hsa-miR-599 tttctatGACACAAacata
0 GUUGUGUC m7b Created no TS -0.377000 -0.010000

Mutation Mutation ID Sample Name Cancer Type
chr3:g.101859802C>T COSN6711214 RK190_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1915-3p gccttagtCCCTGGGagtt
0 CCCCAGGG m7b Disrupted -0.378000 no TS 0.300000
hsa-miR-211-3p gccttaGTCCCTGggagtt
2
GCAGGGAC m7b Disrupted -0.199000 no TS 0.020000
hsa-miR-4685-5p gccttagtCCCTGGGagtt
0 CCCAGGGC m7a Disrupted NA NA No effect
hsa-miR-4726-3p gccttagtcCCTGGGagtt
0 ACCCAGGU m6b Disrupted -0.134000 no TS 0.120000

Mutation Mutation ID Sample Name Cancer Type
chr3:g.101860145A>T COSN1264171 HX15T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-330-3p ttctcaTGCTTTGaaatta
5
GCAAAGCA m7b Created -0.098000 -0.261000 -0.010000
hsa-miR-4422 ttctcATGCTTTgaaatta
0 AAAAGCAU m7b Created -0.059000 -0.108000 0.140000
hsa-miR-5700 ttctcATGCATTgaaatta
5
UAAUGCAU m7b Disrupted -0.041000 no TS 0.070000
hsa-miR-607 ttctcatgcTTTGAAatta
6
GUUCAAAU m6b Created -0.022000 0.043000 No effect
hsa-miR-330-3p ttctcaTGCTTTGaaatta
0 GCAAAGCA m7b Created -0.098 -0.261 -0.01
hsa-miR-4422 ttctcATGCTTTgaaatta
0 AAAAGCAU m7b Created -0.059 -0.108 0.14
hsa-miR-5700 ttctcATGCATTgaaatta
5
UAAUGCAU m7b Disrupted -0.041 no TS 0.07
hsa-miR-607 ttctcatgcTTTGAAatta
0 GUUCAAAU m6b Created -0.022 0.043 No effect

Mutation Mutation ID Sample Name Cancer Type
chr3:g.101860440A>G ICGC_72D285AE-2A78-11E2-96E7-04FD496BB9B8 CPCG_0102_Pr_P_P1 ProstateCancer(OICR,CA)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-338-3p tctcccaaaATGCTGGgat
0 UCCAGCAU m7b (m7b->m6c) -0.137 no TS -0.29
hsa-miR-4310 tctcccaaAATGCTGggat
0 GCAGCAUU m7b Disrupted -0.033 no TS 0.01

Mutation Mutation ID Sample Name Cancer Type
chr3:g.101860591A>G COSN1902056 RK062_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1305 aaagtcagtGTTGAAAcat
2
UUUUCAAC m7b (m6c->m7b) -0.097000 -0.153000 -1.020000
hsa-miR-141-3p aaagtCAGTGTTgaaacat
0 UAACACUG m7b Created no TS -0.146000 -4.983000
hsa-miR-200a-3p aaagtCAGTGTTgaaacat
0 UAACACUG m7b Created no TS -0.146000 -2.670000
hsa-miR-200b-3p aaagtCAGTATTgaaacat
1
UAAUACUG m7b Disrupted -0.106000 no TS -0.170000
hsa-miR-200c-3p aaagtCAGTATTgaaacat
1
UAAUACUG m7b Disrupted -0.106000 no TS -0.170000
hsa-miR-421 aaagtcagTGTTGAaacat
2
AUCAACAG m6b Created -0.312000 -0.376000 -0.890000
hsa-miR-429 aaagtCAGTATTgaaacat
1
UAAUACUG m7b Disrupted -0.106000 no TS -0.120000

Mutation Mutation ID Sample Name Cancer Type
chr3:g.101860650A>C COSN8346974 0006_CRUK_PC_0006_T3_DNA [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-410 tgatgttTTATATatatca
1
AAUAUAAC m6b Disrupted -0.066000 -0.069000 1.950000
hsa-miR-5011-5p tgatgtttTATATATAtca
1
UAUAUAUA m8a Disrupted -0.187000 -0.019000 No effect
hsa-miR-570-3p tgaTGTTTTCtatatatca
0 CGAAAACA m7b (m6b->m7b) -0.017000 -0.123000 No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
101859681 rs36124512 - - hsa-miR-19a-5p
hsa-miR-19b-1-5p
hsa-miR-19b-2-5p
hsa-miR-2052
hsa-miR-2113
hsa-miR-33a-3p
hsa-miR-4307
hsa-miR-5010-3p
hsa-miR-550b-2-5p
2
2
2
2
2
2
2
2
2
ggcaCAAAACAtt
ggcaCAAAACAtt
ggcaCAAAACAtt
ggcaCAAAACAtt
gGCACAAAAcatt
ggcacaAAACATT
ggcacAAAACATt
ggCACAAAAcatt
GGCACAAaacatt
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
N
N
N
N
N
N
N
N
N
-0.024
-0.024
-0.024
-0.026
-0.244
-0.097
-0.021
-0.039
-0.015
G hsa-miR-2116-5p
hsa-miR-22-5p
hsa-miR-4677-5p
hsa-miR-578
hsa-miR-581
2
2
2
2
2
ggcacAAGAACAtt
ggcacAAGAACAtt
ggcacAAGAACAtt
ggcACAAGAAcatt
ggCACAAGAacatt
Unknown
Unknown
Unknown
Unknown
Unknown
N
N
N
N
N
-0.063
-0.075
-0.095
-0.05
-0.115
101860181 rs111417052 - T hsa-miR-4422
hsa-miR-548e-5p
0 gcATGCTTTtttt
gcaTGCTTTTttt
Unknown
Unknown
N
N
-0.003
-0.003
-

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