SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_201551
Gene Symbol: NELL1
Description: Homo sapiens NEL-like 1 (chicken) (NELL1), transcript variant 1, mRNA.
Gene Location: chr11(+):20691116-21597229
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr11:g.21575044G>C COSN8217734 PCSI_0083_Pa_P_526 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3940-5p ggactCAACCCAgaagaat
0 GUGGGUUG m7b Created no TS -0.225000 -16.810000
hsa-miR-4314 ggactcaaCCCAGAagaat
0 CUCUGGGA m6b Created no TS -0.165000 -6.380000
hsa-miR-4507 ggactCAACCCAGaagaat
0 CUGGGUUG m8a Created no TS -0.234000 -19.910000
hsa-miR-4520a-5p ggactcaACGCAGaagaat
0 CCUGCGUG m6b Disrupted -0.243000 no TS 13.940000
hsa-miR-4520b-5p ggactcaACGCAGaagaat
0 CCUGCGUG m6b Disrupted -0.243000 no TS 13.940000

Mutation Mutation ID Sample Name Cancer Type
chr11:g.21575108T>A COSN1130536 HCC141T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3613-3p ttggtTTTTTTGTttgttt
5
ACAAAAAA m8a Disrupted -0.072000 -0.036000 -0.980000
hsa-miR-4803 ttggtttTTATGTTtgttt
0 UAACAUAA m7b Created no TS -0.111000 No effect
hsa-miR-3613-3p ttggtTTTTTTGTttgttt
2
ACAAAAAA m8a Disrupted -0.072 -0.036 -0.98
hsa-miR-4803 ttggtttTTATGTTtgttt
0 UAACAUAA m7b Created no TS -0.111 No effect

Mutation Mutation ID Sample Name Cancer Type
chr11:g.21575162C>T COSN4891997 MPCC_0038_Pa_C [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-21-3p acctgaggaTGGTGTTtgg
0 CAACACCA m7b (m6c->m7b) no TS -0.153000 0.650000
hsa-miR-3591-3p acctgaggaTGGTGTTTgg
0 AAACACCA m8a (m7b->m8a) no TS -0.153000 -4.100000
hsa-miR-5196-3p acctGAGGATGgtgtttgg
0 UCAUCCUC m7b Created no TS -0.172000 -2.190000
hsa-miR-21-3p acctgaggaTGGTGTTtgg
0 CAACACCA m7b (m6c->m7b) no TS -0.153000 0.650000
hsa-miR-3591-3p acctgaggaTGGTGTTTgg
0 AAACACCA m8a (m7b->m8a) no TS -0.153000 -4.100000
hsa-miR-5196-3p acctGAGGATGgtgtttgg
0 UCAUCCUC m7b Created no TS -0.172000 -2.190000

Mutation Mutation ID Sample Name Cancer Type
chr11:g.21575241C>A COSN1130537 HCC88T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-10a-3p agtgccgtGAATTTaagtc
0 CAAAUUCG m6b Created no TS 0.006000 -5.360000
hsa-miR-3177-3p agtGCCGTGCAtttaagtc
1
UGCACGGC m8a Disrupted -0.618000 no TS 2.680000
hsa-miR-4760-3p agtgccgTGAATTTaagtc
0 AAAUUCAU m7a Created NA NA -5.740000
hsa-miR-10a-3p agtgccgtGAATTTaagtc
0 CAAAUUCG m6b Created no TS 0.006000 -5.360000
hsa-miR-3177-3p agtGCCGTGCAtttaagtc
1
UGCACGGC m8a Disrupted -0.618000 no TS 2.680000
hsa-miR-4760-3p agtgccgTGAATTTaagtc
0 AAAUUCAU m7a Created NA NA -5.740000
hsa-miR-10a-3p agtgccgtGAATTTaagtc
0 CAAAUUCG m6b Created no TS 0.006 -5.36
hsa-miR-3177-3p agtGCCGTGCAtttaagtc
1
UGCACGGC m8a Disrupted -0.618 no TS 2.68
hsa-miR-4760-3p agtgccgTGAATTTaagtc
0 AAAUUCAU m7a Created NA NA -5.74

Mutation Mutation ID Sample Name Cancer Type
chr11:g.21575350T>G COSN6998085 8058330 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3613-3p gttgatgtaTTTTTTGgtt
5
ACAAAAAA m7b (m7b->m6c) -0.072000 -0.036000 0.090000
hsa-miR-548ae gttgatgtAGTTTTTGgtt
0 CAAAAACU m8a Created no TS -0.023000 -6.390000
hsa-miR-548ah-3p gttgatgtAGTTTTTGgtt
0 CAAAAACU m8a Created no TS -0.023000 -10.850000
hsa-miR-548aj-3p gttgatgtAGTTTTTggtt
0 UAAAAACU m7b Created no TS -0.023000 -8.140000
hsa-miR-548am-3p gttgatgtAGTTTTTGgtt
0 CAAAAACU m8a Created no TS -0.023000 -9.460000
hsa-miR-548aq-3p gttgatgtAGTTTTTGgtt
0 CAAAAACU m8a Created no TS -0.023000 -10.340000
hsa-miR-548x-3p gttgatgtAGTTTTTggtt
0 UAAAAACU m7b Created no TS -0.023000 -7.640000


Mutation Mutation ID Sample Name Cancer Type
chr11:g.21575565C>A COSN4697380 PD4107a [breast][NS][carcinoma][ductal_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr11:g.21575566C>A COSN4697381 PD4107a [breast][NS][carcinoma][ductal_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3653 gtgctgaacCTTCTTAaat
1
CUAAGAAG m7b (m7b->m6c) -0.165000 -0.012000 -1.250000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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