SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
	Home	Search	Help	Download

Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

RefSeq ID:	NM_004784
Gene Symbol:	NDST3
Description:	Homo sapiens N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 (NDST3), mRNA.
Gene Location:	chr4(+):118955499-119179789
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites

Mutation			Mutation ID		Sample Name		Cancer Type
chr4:g.118256776T>C			COSN5550403		RK076_C01		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-4328	attaaAAAACTGcattttc	3	CCAGUUUU	m7b	Created	-0.140000	-0.154000	No effect

Mutation			Mutation ID		Sample Name		Cancer Type
chr4:g.118257312T>C			COSN14634380		8068539		[pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-3613-3p	taaTTTTTGTatttttagt	7	ACAAAAAA	m7a	(m7a->m6a)	0.575000	0.575000	0.150000
hsa-miR-548aw	taatTTTTGCAtttttagt	6	GUGCAAAA	m7b	Created	0.012000	0.046000	-0.440000

Mutation			Mutation ID		Sample Name		Cancer Type
chr4:g.118257324T>A			ICGC_763AA820-2A78-11E2-96E7-04FD496BB9B8		CPCG_0102_Pr_P_P1		ProstateCancer(OICR,CA)
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-4421	ttttagtagAGACAGGgtt	0	ACCUGUCU	m7b	(m6c->m7b)	-0.378	-0.433	No effect
hsa-miR-4684-5p	ttttaGTAGAGAcagggtt	0	CUCUCUAC	m7b	Created	-0.145	-0.165	-0.04
hsa-miR-5699	ttttagtagAGACAGGgtt	0	UCCUGUCU	m7b	(m6c->m7b)	-0.336	-0.363	-0.58

Mutation			Mutation ID		Sample Name		Cancer Type
chr4:g.118257524T>A			COSN14910410		LP6005409-DNA_F02		[oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-126-5p	tataaAATAATatcaaagg	1	CAUUAUUA	m6b	Created	0.125000	0.241000	No effect
hsa-miR-3161	tataaaataTTATCAaagg	5	CUGAUAAG	m6b	Disrupted	0.019000	no TS	No effect
hsa-miR-4795-3p	tataaAATAATATcaaagg	1	AUAUUAUU	m8a	Created	0.060000	0.121000	No effect
hsa-miR-5692b	tataaaATATTATcaaagg	3	AAUAAUAU	m7b	Disrupted	0.067000	0.023000	0.010000
hsa-miR-5692c	tataaaATATTATcaaagg	3	AAUAAUAU	m7b	Disrupted	0.067000	0.023000	No effect
hsa-miR-656	tataaaATAATATcaaagg	0	AAUAUUAU	m7b	Created	0.194000	0.246000	No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser