SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_207363 |
---|---|
Gene Symbol: | NCKAP5 |
Description: | Homo sapiens NCK-associated protein 5 (NCKAP5), transcript variant 1, mRNA. |
Gene Location: | chr2(-):133429371-134326031 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.132672043A>C | COSN1788575 | RK130_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-142-5p |
atgtgaactCTTTATaatt |
13 |
CAUAAAGU | m6b | Created | 0.003000 | -0.006000 |
-0.540000 |
hsa-miR-340-5p |
atgtgaactCTTTATAAtt |
13 |
UUAUAAAG | m8a | (m7a->m8a) | -0.013000 | -0.153000 | No effect |
hsa-miR-4311 |
atgtgaaCTCTTTataatt |
0 | GAAAGAGA | m6b | Created | no TS | -0.052000 |
-0.010000 |
hsa-miR-5590-3p |
atgtgaactCTTTATaatt |
13 |
AAUAAAGU | m6b | Created | 0.006000 | -0.003000 |
-0.620000 |
hsa-miR-583 |
atgtgaaCTCTTTataatt |
0 | CAAAGAGG | m6b | Created | no TS | -0.067000 |
-0.050000 |
hsa-miR-142-5p |
atgtgaactCTTTATaatt |
13 |
CAUAAAGU | m6b | Created | 0.003000 | -0.006000 |
-0.540000 |
hsa-miR-340-5p |
atgtgaactCTTTATAAtt |
13 |
UUAUAAAG | m8a | (m7a->m8a) | -0.013000 | -0.153000 | No effect |
hsa-miR-4311 |
atgtgaaCTCTTTataatt |
0 | GAAAGAGA | m6b | Created | no TS | -0.052000 |
-0.010000 |
hsa-miR-5590-3p |
atgtgaactCTTTATaatt |
13 |
AAUAAAGU | m6b | Created | 0.006000 | -0.003000 |
-0.620000 |
hsa-miR-583 |
atgtgaaCTCTTTataatt |
0 | CAAAGAGG | m6b | Created | no TS | -0.067000 |
-0.050000 |
hsa-miR-142-5p |
atgtgaactCTTTATaatt |
0 | CAUAAAGU | m6b | Created | 0.003 | -0.006 |
-0.54 |
hsa-miR-340-5p |
atgtgaactCTTTATAAtt |
0 | UUAUAAAG | m8a | (m7a->m8a) | -0.013 | -0.153 | No effect |
hsa-miR-4311 |
atgtgaaCTCTTTataatt |
0 | GAAAGAGA | m6b | Created | no TS | -0.052 |
-0.01 |
hsa-miR-5590-3p |
atgtgaactCTTTATaatt |
0 | AAUAAAGU | m6b | Created | 0.006 | -0.003 |
-0.62 |
hsa-miR-583 |
atgtgaaCTCTTTataatt |
0 | CAAAGAGG | m6b | Created | no TS | -0.067 |
-0.05 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.132672683C>T | COSN5781559 | HX24T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-183-5p |
gaatcaGTGCCATgctctt |
12 |
UAUGGCAC | m7b | Disrupted | -0.170000 | no TS |
2.010000 |
hsa-miR-3117-5p |
gaatcAGTGTCatgctctt |
1 |
AGACACUA | m6b | Created | -0.112000 | -0.222000 |
-0.630000 |
hsa-miR-425-5p |
gaatcaGTGTCATgctctt |
1 |
AAUGACAC | m7b | Created | -0.163000 | -0.295000 |
-2.620000 |