SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_015194
Gene Symbol: MYO1D
Description: Homo sapiens myosin ID (MYO1D), mRNA.
Gene Location: chr17(-):30819627-31203902
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr17:g.32494287A>G COSN7164056 8016470 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3921 gctctgCTCAGAGttcggc
0 UCUCUGAG m7b Disrupted -0.123000 -0.099000 No effect
hsa-miR-4303 gctctGCTCAGAgttcggc
5
UUCUGAGC m7b Disrupted -0.072000 no TS No effect
hsa-miR-4653-5p gctctgCTCAGAGttcggc
0 UCUCUGAG m7b Disrupted -0.153000 -0.120000 0.450000
hsa-miR-4680-5p gctctgctcAGAGTTCggc
2
AGAACUCU m7b (m7b->m6b) 0.015000 no TS 0.050000
hsa-miR-4714-5p gctctgcTCAGAGTTcggc
2
AACUCUGA m8a Disrupted 0.001000 no TS -0.040000

Mutation Mutation ID Sample Name Cancer Type
chr17:g.32494659G>T COSN8602932 J52_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-103a-3p accTGCTGCTagggcccct
0 AGCAGCAU m7a (m6b->m7a) NA NA -3.470000
hsa-miR-107 accTGCTGCTagggcccct
0 AGCAGCAU m7a (m6b->m7a) NA NA -3.330000
hsa-miR-15a-5p accTGCTGCTAgggcccct
2
UAGCAGCA m8a Created -0.049000 -0.282000 -0.620000
hsa-miR-15b-5p accTGCTGCTAgggcccct
2
UAGCAGCA m8a Created -0.049000 -0.282000 -0.830000
hsa-miR-16-5p accTGCTGCTAgggcccct
2
UAGCAGCA m8a Created -0.031000 -0.274000 -3.340000
hsa-miR-195-5p accTGCTGCTAgggcccct
2
UAGCAGCA m8a Created -0.031000 -0.274000 -0.990000
hsa-miR-424-5p accTGCTGCTagggcccct
2
CAGCAGCA m7b (m6c->m7b) -0.031000 -0.264000 -1.540000
hsa-miR-4524a-5p acctGCTGCTAgggcccct
0 AUAGCAGC m7b Created no TS -0.130000 -0.020000
hsa-miR-4524b-5p acctGCTGCTAgggcccct
0 AUAGCAGC m7b Created no TS -0.130000 -0.010000
hsa-miR-497-5p accTGCTGCTagggcccct
2
CAGCAGCA m7b (m6c->m7b) -0.049000 -0.282000 -0.820000
hsa-miR-646 acctGCTGCTagggcccct
3
AAGCAGCU m6b Created -0.077000 -0.171000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr17:g.32494720C>T cosmic_v64_1675358 Melanoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-122-5p gccACACTCCgagtcctgg
0 UGGAGUGU m7b (m7b->m6c) -0.059 no TS No effect
hsa-miR-5586-3p gccaCACTCTGagtcctgg
0 CAGAGUGA m7a Created NA NA -0.09
hsa-miR-759 gccaCACTCTGagtcctgg
0 GCAGAGUG m7b Created 0.019 -0.184 No effect

Mutation Mutation ID Sample Name Cancer Type
chr17:g.32494737G>A COSN5839232 HCC170 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3187-5p gcctgGCCCAGagcccggc
2
CCUGGGCA m6b Created -0.287000 -0.381000 0.010000
hsa-miR-326 gcctggCCCAGAGcccggc
1
CCUCUGGG m7b Created -0.297000 -0.386000 -0.170000
hsa-miR-330-5p gcctggCCCAGAGcccggc
1
UCUCUGGG m7b Created -0.269000 -0.320000 -0.010000
hsa-miR-378g gcctgGCCCAGagcccggc
2
ACUGGGCU m6b Created -0.359000 -0.460000 0.060000
hsa-miR-4486 gcctgGCCCAGagcccggc
0 GCUGGGCG m6b Created -0.462000 -0.584000 No effect
hsa-miR-4640-5p gcCTGGCCCAgagcccggc
3
UGGGCCAG m8a (m7b->m8a) -0.108000 -0.335000 No effect
hsa-miR-612 gcctgGCCCAGagcccggc
2
GCUGGGCA m6b Created -0.272000 -0.369000 No effect
hsa-miR-760 gcctggccCAGAGCCcggc
0 CGGCUCUG m7b Created no TS -0.052000 No effect
hsa-miR-3187-5p gcctgGCCCAGagcccggc
2
CCUGGGCA m6b Created -0.287000 -0.381000 0.010000
hsa-miR-326 gcctggCCCAGAGcccggc
1
CCUCUGGG m7b Created -0.297000 -0.386000 -0.170000
hsa-miR-330-5p gcctggCCCAGAGcccggc
1
UCUCUGGG m7b Created -0.269000 -0.320000 -0.010000
hsa-miR-378g gcctgGCCCAGagcccggc
2
ACUGGGCU m6b Created -0.359000 -0.460000 0.060000
hsa-miR-4486 gcctgGCCCAGagcccggc
0 GCUGGGCG m6b Created -0.462000 -0.584000 No effect
hsa-miR-4640-5p gcCTGGCCCAgagcccggc
3
UGGGCCAG m8a (m7b->m8a) -0.108000 -0.335000 No effect
hsa-miR-612 gcctgGCCCAGagcccggc
2
GCUGGGCA m6b Created -0.272000 -0.369000 No effect
hsa-miR-760 gcctggccCAGAGCCcggc
0 CGGCUCUG m7b Created no TS -0.052000 No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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