SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_138716
Gene Symbol: MSR1
Description: Homo sapiens macrophage scavenger receptor 1 (MSR1), transcript variant SR-AII, mRNA.
Gene Location: chr8(-):15965386-16050300
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr8:g.16108394A>C COSN8854252 SS6003317 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1255b-2-3p ttatgcgtAAGTGGTatgc
1
AACCACUU m7b Disrupted -0.312000 -0.081000 0.020000

Mutation Mutation ID Sample Name Cancer Type
chr8:g.16108779A>T COSN14918877 CHC433T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4677-3p ggtagaCTCACAGccgtcc
1
UCUGUGAG m7b Disrupted -0.041000 no TS 1.150000
hsa-miR-5007-5p ggtAGACTCTcagccgtcc
0 UAGAGUCU m7b (m6c->m7b) no TS -0.062000 -4.570000
hsa-miR-627 ggtAGACTCACagccgtcc
3
GUGAGUCU m8a Disrupted -0.021000 no TS 0.370000

Mutation Mutation ID Sample Name Cancer Type
chr8:g.16109222C>T COSN1361912 HX9T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3145-5p gtTTGGAGTTttttatgaa
2
AACUCCAA m8a (m7b->m8a) -0.116000 -0.143000 -0.300000
hsa-miR-4432 gtttgGAGTCTTTtatgaa
4
AAAGACUC m8a Disrupted -0.089000 no TS 2.310000
hsa-miR-548ae gtttggAGTTTTTtatgaa
6
CAAAAACU m7b Created -0.006000 0.087000 -1.820000
hsa-miR-548ah-3p gtttggAGTTTTTtatgaa
6
CAAAAACU m7b Created -0.013000 0.070000 -3.690000
hsa-miR-548aj-3p gtttggAGTTTTTtatgaa
6
UAAAAACU m7b Created -0.006000 0.087000 -3.140000
hsa-miR-548am-3p gtttggAGTTTTTtatgaa
6
CAAAAACU m7b Created -0.013000 0.070000 -2.720000
hsa-miR-548aq-3p gtttggAGTTTTTtatgaa
6
CAAAAACU m7b Created -0.006000 0.087000 -3.410000
hsa-miR-548u gtttggAGTCTTTtatgaa
0 CAAAGACU m7b Disrupted 0.082000 0.085000 2.120000
hsa-miR-548x-3p gtttggAGTTTTTtatgaa
6
UAAAAACU m7b Created -0.006000 0.087000 -1.700000
hsa-miR-3145-5p gtTTGGAGTTttttatgaa
0 AACUCCAA m8a (m7b->m8a) -0.116 -0.143 -0.3
hsa-miR-4432 gtttgGAGTCTTTtatgaa
0 AAAGACUC m8a Disrupted -0.089 no TS 2.31
hsa-miR-548ae gtttggAGTTTTTtatgaa
0 CAAAAACU m7b Created -0.006 0.087 -1.82
hsa-miR-548ah-3p gtttggAGTTTTTtatgaa
0 CAAAAACU m7b Created -0.013 0.07 -3.69
hsa-miR-548aj-3p gtttggAGTTTTTtatgaa
0 UAAAAACU m7b Created -0.006 0.087 -3.14
hsa-miR-548am-3p gtttggAGTTTTTtatgaa
0 CAAAAACU m7b Created -0.013 0.07 -2.72
hsa-miR-548aq-3p gtttggAGTTTTTtatgaa
0 CAAAAACU m7b Created -0.006 0.087 -3.41
hsa-miR-548u gtttggAGTCTTTtatgaa
0 CAAAGACU m7b Disrupted 0.082 0.085 2.12
hsa-miR-548x-3p gtttggAGTTTTTtatgaa
0 UAAAAACU m7b Created -0.006 0.087 -1.7

Mutation Mutation ID Sample Name Cancer Type
chr8:g.16109301T>C COSN4878371 tumor_4104893 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-183-3p tttaaAATTCAaatctgat
1
GUGAAUUA m6b Created 0.116000 0.133000 -1.520000
hsa-miR-4452 tttaaAATTCAAatctgat
2
UUGAAUUC m7a Created 0.003000 0.018000 No effect
hsa-miR-513a-3p tttaAAATTTAaatctgat
1
UAAAUUUC m7a Disrupted 0.122000 0.003000 No effect
hsa-miR-513c-3p tttaAAATTTAaatctgat
1
UAAAUUUC m7a Disrupted 0.122000 0.003000 0.010000

Mutation Mutation ID Sample Name Cancer Type
chr8:g.16109515A>G 9_46898 CRC-5-Tumor Colorectal adenocarcinoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3136-3p ccactaTGGGCCAgggagc
2
UGGCCCAA m7a Created no TS -0.156 0.17

Mutation Mutation ID Sample Name Cancer Type
chr8:g.16109756T>C COSN2268093 RK106_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-656 aattcATAATATgttcacc
2
AAUAUUAU m7b Disrupted -0.083000 -0.119000 1.630000
hsa-miR-656 aattcATAATATgttcacc
0 AAUAUUAU m7b Disrupted -0.083 -0.119 1.63


Mutation Mutation ID Sample Name Cancer Type
chr8:g.16109838A>G COSN8075414 8035603 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr8:g.16109839G>T COSN8075415 8035603 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-10a-3p tgctGAATTTaacattttg
0 CAAAUUCG m6b Created no TS -0.028000 -2.100000
hsa-miR-4760-3p tgcTGAATTTaacattttg
2
AAAUUCAU m7a (m6b->m7a) 0.104000 0.104000 No effect


Mutation Mutation ID Sample Name Cancer Type
chr8:g.16109888A>G COSN6918052 RK211_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr8:g.16110025G>T COSN1361913 HCC122T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3148 tattaccTTTTTCCtgtaa
0 UGGAAAAA m7b Created no TS -0.087000 -0.020000
hsa-miR-548ag taTTACCTTTttcctgtaa
2
AAAGGUAA m8a (m7b->m8a) -0.477000 -0.504000 0.330000
hsa-miR-548ai taTTACCTTTttcctgtaa
2
AAAGGUAA m8a (m7b->m8a) -0.495000 -0.522000 0.440000
hsa-miR-548m tatTACCTTTttcctgtaa
0 CAAAGGUA m7b (m6c->m7b) -0.332000 -0.580000 -2.110000
hsa-miR-570-5p taTTACCTTTttcctgtaa
2
AAAGGUAA m8a (m7b->m8a) -0.495000 -0.522000 0.440000
hsa-miR-624-3p tattACCTTGTtcctgtaa
1
CACAAGGU m7b Disrupted -0.263000 no TS 1.150000
hsa-miR-873-5p tattaccttGTTCCTGtaa
1
GCAGGAAC m7b (m7b->m6b) -0.272000 no TS 1.770000
hsa-miR-3148 tattaccTTTTTCCtgtaa
0 UGGAAAAA m7b Created no TS -0.087000 -0.020000
hsa-miR-548ag taTTACCTTTttcctgtaa
2
AAAGGUAA m8a (m7b->m8a) -0.477000 -0.504000 0.330000
hsa-miR-548ai taTTACCTTTttcctgtaa
2
AAAGGUAA m8a (m7b->m8a) -0.495000 -0.522000 0.440000
hsa-miR-548m tatTACCTTTttcctgtaa
0 CAAAGGUA m7b (m6c->m7b) -0.332000 -0.580000 -2.110000
hsa-miR-570-5p taTTACCTTTttcctgtaa
2
AAAGGUAA m8a (m7b->m8a) -0.495000 -0.522000 0.440000
hsa-miR-624-3p tattACCTTGTtcctgtaa
1
CACAAGGU m7b Disrupted -0.263000 no TS 1.150000
hsa-miR-873-5p tattaccttGTTCCTGtaa
1
GCAGGAAC m7b (m7b->m6b) -0.272000 no TS 1.770000
hsa-miR-3148 tattaccTTTTTCCtgtaa
0 UGGAAAAA m7b Created no TS -0.087 -0.02
hsa-miR-548ag taTTACCTTTttcctgtaa
0 AAAGGUAA m8a (m7b->m8a) -0.477 -0.504 0.33
hsa-miR-548ai taTTACCTTTttcctgtaa
0 AAAGGUAA m8a (m7b->m8a) -0.495 -0.522 0.44
hsa-miR-548m tatTACCTTTttcctgtaa
0 CAAAGGUA m7b (m6c->m7b) -0.332 -0.58 -2.11
hsa-miR-570-5p taTTACCTTTttcctgtaa
0 AAAGGUAA m8a (m7b->m8a) -0.495 -0.522 0.44
hsa-miR-624-3p tattACCTTGTtcctgtaa
0 CACAAGGU m7b Disrupted -0.263 no TS 1.15
hsa-miR-873-5p tattaccttGTTCCTGtaa
0 GCAGGAAC m7b (m7b->m6b) -0.272 no TS 1.77

Mutation Mutation ID Sample Name Cancer Type
chr8:g.16110073T>G COSN8810505 SNUH_G16_S1 [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-338-5p catcATATTGTcattcaca
0 AACAAUAU m7b Created -0.067000 -0.134000 No effect
hsa-miR-4517 caTCATATTTtcattcaca
7
AAAUAUGA m8a (m8a->m7b) -0.012000 -0.012000 No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
16108780 rs141117106 C C hsa-miR-4677-3p
hsa-miR-627-5p
hsa-miR-7974
hsa-miR-924
1
3
5
3
tagaCTCACAGcc
tAGACTCAcagcc
tagactCACAGCC
tAGACTCAcagcc
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
-0.041
-0.021
-0.143
-0.018
T hsa-miR-1264
hsa-miR-1537-5p
hsa-miR-3184-3p
3
5
3
tAGACTTAcagcc
tagacTTACAGCc
tAGACTTAcagcc
Created
Created
Created
N
N
N
0.036
-0.018
0.029
16108820 rs180735560 T T hsa-miR-4517
4
tTCATATTctgaa
Disrupted
N
-0.006
C hsa-miR-759
7
ttcatACTCTGAa
Created
N
-0.048
16109164 rs181913935 G G hsa-miR-548u
hsa-miR-7161-5p
1
1
gggtgcGTCTTTA
gggtgcGTCTTTA
Disrupted
Disrupted
N
N
0.085
0.088
A hsa-miR-501-3p
hsa-miR-502-3p
0 gGGTGCATcttta
gGGTGCATcttta
Created
Created
N
N
-0.025
-0.025
16110073 rs12677608 T
G hsa-miR-338-5p
9
cATATTGTcattc
Created
N
No Change

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