SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_138716 |
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Gene Symbol: | MSR1 |
Description: | Homo sapiens macrophage scavenger receptor 1 (MSR1), transcript variant SR-AII, mRNA. |
Gene Location: | chr8(-):15965386-16050300 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.16108394A>C | COSN8854252 | SS6003317 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1255b-2-3p |
ttatgcgtAAGTGGTatgc |
1 |
AACCACUU | m7b | Disrupted | -0.312000 | -0.081000 |
0.020000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.16108779A>T | COSN14918877 | CHC433T | [liver][NS][carcinoma][hepatocellular_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4677-3p |
ggtagaCTCACAGccgtcc |
1 |
UCUGUGAG | m7b | Disrupted | -0.041000 | no TS |
1.150000 |
|
hsa-miR-5007-5p |
ggtAGACTCTcagccgtcc |
0 | UAGAGUCU | m7b | (m6c->m7b) | no TS | -0.062000 |
-4.570000 |
|
hsa-miR-627 |
ggtAGACTCACagccgtcc |
3 |
GUGAGUCU | m8a | Disrupted | -0.021000 | no TS |
0.370000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.16109222C>T | COSN1361912 | HX9T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3145-5p |
gtTTGGAGTTttttatgaa |
2 |
AACUCCAA | m8a | (m7b->m8a) | -0.116000 | -0.143000 |
-0.300000 |
|
hsa-miR-4432 |
gtttgGAGTCTTTtatgaa |
4 |
AAAGACUC | m8a | Disrupted | -0.089000 | no TS |
2.310000 |
|
hsa-miR-548ae |
gtttggAGTTTTTtatgaa |
6 |
CAAAAACU | m7b | Created | -0.006000 | 0.087000 |
-1.820000 |
|
hsa-miR-548ah-3p |
gtttggAGTTTTTtatgaa |
6 |
CAAAAACU | m7b | Created | -0.013000 | 0.070000 |
-3.690000 |
|
hsa-miR-548aj-3p |
gtttggAGTTTTTtatgaa |
6 |
UAAAAACU | m7b | Created | -0.006000 | 0.087000 |
-3.140000 |
|
hsa-miR-548am-3p |
gtttggAGTTTTTtatgaa |
6 |
CAAAAACU | m7b | Created | -0.013000 | 0.070000 |
-2.720000 |
|
hsa-miR-548aq-3p |
gtttggAGTTTTTtatgaa |
6 |
CAAAAACU | m7b | Created | -0.006000 | 0.087000 |
-3.410000 |
|
hsa-miR-548u |
gtttggAGTCTTTtatgaa |
0 | CAAAGACU | m7b | Disrupted | 0.082000 | 0.085000 |
2.120000 |
|
hsa-miR-548x-3p |
gtttggAGTTTTTtatgaa |
6 |
UAAAAACU | m7b | Created | -0.006000 | 0.087000 |
-1.700000 |
|
hsa-miR-3145-5p |
gtTTGGAGTTttttatgaa |
0 | AACUCCAA | m8a | (m7b->m8a) | -0.116 | -0.143 |
-0.3 |
|
hsa-miR-4432 |
gtttgGAGTCTTTtatgaa |
0 | AAAGACUC | m8a | Disrupted | -0.089 | no TS |
2.31 |
|
hsa-miR-548ae |
gtttggAGTTTTTtatgaa |
0 | CAAAAACU | m7b | Created | -0.006 | 0.087 |
-1.82 |
|
hsa-miR-548ah-3p |
gtttggAGTTTTTtatgaa |
0 | CAAAAACU | m7b | Created | -0.013 | 0.07 |
-3.69 |
|
hsa-miR-548aj-3p |
gtttggAGTTTTTtatgaa |
0 | UAAAAACU | m7b | Created | -0.006 | 0.087 |
-3.14 |
|
hsa-miR-548am-3p |
gtttggAGTTTTTtatgaa |
0 | CAAAAACU | m7b | Created | -0.013 | 0.07 |
-2.72 |
|
hsa-miR-548aq-3p |
gtttggAGTTTTTtatgaa |
0 | CAAAAACU | m7b | Created | -0.006 | 0.087 |
-3.41 |
|
hsa-miR-548u |
gtttggAGTCTTTtatgaa |
0 | CAAAGACU | m7b | Disrupted | 0.082 | 0.085 |
2.12 |
|
hsa-miR-548x-3p |
gtttggAGTTTTTtatgaa |
0 | UAAAAACU | m7b | Created | -0.006 | 0.087 |
-1.7 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.16109301T>C | COSN4878371 | tumor_4104893 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-183-3p |
tttaaAATTCAaatctgat |
1 |
GUGAAUUA | m6b | Created | 0.116000 | 0.133000 |
-1.520000 |
|
hsa-miR-4452 |
tttaaAATTCAAatctgat |
2 |
UUGAAUUC | m7a | Created | 0.003000 | 0.018000 | No effect | |
hsa-miR-513a-3p |
tttaAAATTTAaatctgat |
1 |
UAAAUUUC | m7a | Disrupted | 0.122000 | 0.003000 | No effect | |
hsa-miR-513c-3p |
tttaAAATTTAaatctgat |
1 |
UAAAUUUC | m7a | Disrupted | 0.122000 | 0.003000 |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.16109515A>G | 9_46898 | CRC-5-Tumor | Colorectal adenocarcinoma | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3136-3p |
ccactaTGGGCCAgggagc |
2 |
UGGCCCAA | m7a | Created | no TS | -0.156 |
0.17 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.16109756T>C | COSN2268093 | RK106_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-656 |
aattcATAATATgttcacc |
2 |
AAUAUUAU | m7b | Disrupted | -0.083000 | -0.119000 |
1.630000 |
|
hsa-miR-656 |
aattcATAATATgttcacc |
0 | AAUAUUAU | m7b | Disrupted | -0.083 | -0.119 |
1.63 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.16109838A>G | COSN8075414 | 8035603 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.16109839G>T | COSN8075415 | 8035603 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-10a-3p |
tgctGAATTTaacattttg |
0 | CAAAUUCG | m6b | Created | no TS | -0.028000 |
-2.100000 |
|
hsa-miR-4760-3p |
tgcTGAATTTaacattttg |
2 |
AAAUUCAU | m7a | (m6b->m7a) | 0.104000 | 0.104000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.16109888A>G | COSN6918052 | RK211_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.16110025G>T | COSN1361913 | HCC122T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3148 |
tattaccTTTTTCCtgtaa |
0 | UGGAAAAA | m7b | Created | no TS | -0.087000 |
-0.020000 |
|
hsa-miR-548ag |
taTTACCTTTttcctgtaa |
2 |
AAAGGUAA | m8a | (m7b->m8a) | -0.477000 | -0.504000 |
0.330000 |
|
hsa-miR-548ai |
taTTACCTTTttcctgtaa |
2 |
AAAGGUAA | m8a | (m7b->m8a) | -0.495000 | -0.522000 |
0.440000 |
|
hsa-miR-548m |
tatTACCTTTttcctgtaa |
0 | CAAAGGUA | m7b | (m6c->m7b) | -0.332000 | -0.580000 |
-2.110000 |
|
hsa-miR-570-5p |
taTTACCTTTttcctgtaa |
2 |
AAAGGUAA | m8a | (m7b->m8a) | -0.495000 | -0.522000 |
0.440000 |
|
hsa-miR-624-3p |
tattACCTTGTtcctgtaa |
1 |
CACAAGGU | m7b | Disrupted | -0.263000 | no TS |
1.150000 |
|
hsa-miR-873-5p |
tattaccttGTTCCTGtaa |
1 |
GCAGGAAC | m7b | (m7b->m6b) | -0.272000 | no TS |
1.770000 |
|
hsa-miR-3148 |
tattaccTTTTTCCtgtaa |
0 | UGGAAAAA | m7b | Created | no TS | -0.087000 |
-0.020000 |
|
hsa-miR-548ag |
taTTACCTTTttcctgtaa |
2 |
AAAGGUAA | m8a | (m7b->m8a) | -0.477000 | -0.504000 |
0.330000 |
|
hsa-miR-548ai |
taTTACCTTTttcctgtaa |
2 |
AAAGGUAA | m8a | (m7b->m8a) | -0.495000 | -0.522000 |
0.440000 |
|
hsa-miR-548m |
tatTACCTTTttcctgtaa |
0 | CAAAGGUA | m7b | (m6c->m7b) | -0.332000 | -0.580000 |
-2.110000 |
|
hsa-miR-570-5p |
taTTACCTTTttcctgtaa |
2 |
AAAGGUAA | m8a | (m7b->m8a) | -0.495000 | -0.522000 |
0.440000 |
|
hsa-miR-624-3p |
tattACCTTGTtcctgtaa |
1 |
CACAAGGU | m7b | Disrupted | -0.263000 | no TS |
1.150000 |
|
hsa-miR-873-5p |
tattaccttGTTCCTGtaa |
1 |
GCAGGAAC | m7b | (m7b->m6b) | -0.272000 | no TS |
1.770000 |
|
hsa-miR-3148 |
tattaccTTTTTCCtgtaa |
0 | UGGAAAAA | m7b | Created | no TS | -0.087 |
-0.02 |
|
hsa-miR-548ag |
taTTACCTTTttcctgtaa |
0 | AAAGGUAA | m8a | (m7b->m8a) | -0.477 | -0.504 |
0.33 |
|
hsa-miR-548ai |
taTTACCTTTttcctgtaa |
0 | AAAGGUAA | m8a | (m7b->m8a) | -0.495 | -0.522 |
0.44 |
|
hsa-miR-548m |
tatTACCTTTttcctgtaa |
0 | CAAAGGUA | m7b | (m6c->m7b) | -0.332 | -0.58 |
-2.11 |
|
hsa-miR-570-5p |
taTTACCTTTttcctgtaa |
0 | AAAGGUAA | m8a | (m7b->m8a) | -0.495 | -0.522 |
0.44 |
|
hsa-miR-624-3p |
tattACCTTGTtcctgtaa |
0 | CACAAGGU | m7b | Disrupted | -0.263 | no TS |
1.15 |
|
hsa-miR-873-5p |
tattaccttGTTCCTGtaa |
0 | GCAGGAAC | m7b | (m7b->m6b) | -0.272 | no TS |
1.77 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.16110073T>G | COSN8810505 | SNUH_G16_S1 | [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-338-5p |
catcATATTGTcattcaca |
0 | AACAAUAU | m7b | Created | -0.067000 | -0.134000 | No effect |
hsa-miR-4517 |
caTCATATTTtcattcaca |
7 |
AAAUAUGA | m8a | (m8a->m7b) | -0.012000 | -0.012000 | No effect |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
16108780 | rs141117106 | C | C |
hsa-miR-4677-3p hsa-miR-627-5p hsa-miR-7974 hsa-miR-924 |
1 3 5 3 |
tagaCTCACAGcc tAGACTCAcagcc tagactCACAGCC tAGACTCAcagcc |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
-0.041 -0.021 -0.143 -0.018 |
T |
hsa-miR-1264 hsa-miR-1537-5p hsa-miR-3184-3p |
3 5 3 |
tAGACTTAcagcc tagacTTACAGCc tAGACTTAcagcc |
Created Created Created |
N N N |
0.036 -0.018 0.029 |
|||
16108820 | rs180735560 | T | T |
hsa-miR-4517 |
4 |
tTCATATTctgaa |
Disrupted |
N |
-0.006 |
C |
hsa-miR-759 |
7 |
ttcatACTCTGAa |
Created |
N |
-0.048 |
|||
16109164 | rs181913935 | G | G |
hsa-miR-548u hsa-miR-7161-5p |
1 1 |
gggtgcGTCTTTA gggtgcGTCTTTA |
Disrupted Disrupted |
N N |
0.085 0.088 |
A |
hsa-miR-501-3p hsa-miR-502-3p |
0 |
gGGTGCATcttta gGGTGCATcttta |
Created Created |
N N |
-0.025 -0.025 |
|||
16110073 | rs12677608 | T | |||||||
G |
hsa-miR-338-5p |
9 |
cATATTGTcattc |
Created |
N |
No Change |