SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001170418 |
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Gene Symbol: | MOG |
Description: | Homo sapiens myelin oligodendrocyte glycoprotein (MOG), transcript variant alpha3, mRNA. |
Gene Location: | chr6(+):29624757-29640149 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.29671296A>T | COSN2159026 | RK138_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1 |
gctatggggACATTCCAat |
5 |
UGGAAUGU | m8a | (m8a->m7b) | -0.254000 | -0.090000 | No effect | |
hsa-miR-206 |
gctatggggACATTCCAat |
5 |
UGGAAUGU | m8a | (m8a->m7b) | -0.254000 | -0.090000 |
0.010000 |
|
hsa-miR-613 |
gctatggggACATTCCaat |
5 |
AGGAAUGU | m7b | (m7b->m6c) | -0.233000 | -0.083000 |
2.600000 |
|
hsa-miR-1 |
gctatggggACATTCCAat |
0 | UGGAAUGU | m8a | (m8a->m7b) | -0.254 | -0.09 | No effect | |
hsa-miR-206 |
gctatggggACATTCCAat |
0 | UGGAAUGU | m8a | (m8a->m7b) | -0.254 | -0.09 |
0.01 |
|
hsa-miR-613 |
gctatggggACATTCCaat |
0 | AGGAAUGU | m7b | (m7b->m6c) | -0.233 | -0.083 |
2.6 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.29671559A>T | COSN8513957 | 1428_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1183 |
gaaaatTACAGTatggtaa |
2 |
CACUGUAG | m6b | Disrupted | -0.090000 | no TS |
5.600000 |
|
hsa-miR-3607-3p |
gaaaaTTACAGTatggtaa |
0 | ACUGUAAA | m7a | Disrupted | NA | NA |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.29671943C>A | COSN9779908 | AOCS-105-1-9 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1244 |
attcaacAACTACTacttg |
2 |
AAGUAGUU | m7b | Disrupted | -0.207000 | no TS |
3.740000 |
|
hsa-miR-4703-3p |
attcaaCAACTACtacttg |
2 |
UGUAGUUG | m7b | Disrupted | -0.191000 | no TS |
0.020000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.29672242C>A | COSN5810910 | EOPC-03_tumor | [prostate][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4695-3p |
agcTGAGATCgtgccactg |
2 |
UGAUCUCA | m7b | (m7b->m6b) | -0.104000 | no TS |
15.180000 |
|
hsa-miR-564 |
agctgagatCGTGCCactg |
0 | AGGCACGG | m6b | Disrupted | -0.213000 | no TS |
3.760000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.29672293T>A | COSN6513612 | HCC160T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.29672305T>A | COSN9312174 | 8051716 | [pancreas][NS][carcinoid-endocrine_tumour][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.29672313T>A | COSN9312175 | 8051716 | [pancreas][NS][carcinoid-endocrine_tumour][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
29671301 | rs140693792 | C | C |
hsa-miR-1 hsa-miR-206 hsa-miR-3673 hsa-miR-613 hsa-miR-6505-5p |
5 5 4 5 5 |
gACATTCCAattt gACATTCCAattt gaCATTCCAAttt gACATTCCAattt gacATTCCAAttt |
Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N |
-0.254 -0.254 -0.297 -0.233 -0.087 |
G |
hsa-miR-106a-3p |
4 |
gaCATTGCAAttt |
Created |
N |
-0.301 |