| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_001145938 |
|---|---|
| Gene Symbol: | MMP1 |
| Description: | Homo sapiens matrix metallopeptidase 1 (interstitial collagenase) (MMP1), transcript variant 2, mRNA. |
| Gene Location: | chr11(-):102660640-102668966 |
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| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr11:g.102790349C>T | COSN164034 | GC8_T | [stomach][NS][carcinoma][adenocarcinoma] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-22-5p |
cctGAAGAACTgtctattt |
4 |
AGUUCUUC | m8a | Disrupted | -0.209000 | -0.037000 |
0.160000 |
| hsa-miR-4277 |
cctgaAGAACTGtctattt |
0 | GCAGUUCU | m7b | Disrupted | -0.191000 | no TS |
2.250000 |
| hsa-miR-4524b-3p |
cctgaagaaCTGTCTattt |
0 | GAGACAGG | m6b | Disrupted | -0.133000 | no TS |
1.990000 |
| hsa-miR-4645-3p |
cctgaagaACTGTCTattt |
0 | AGACAGUA | m7a | Disrupted | NA | NA | No effect |
| hsa-miR-5584-3p |
cctgAAGAACTgtctattt |
0 | UAGUUCUU | m7b | Disrupted | -0.088000 | no TS |
1.560000 |
| hsa-miR-22-5p |
cctGAAGAACTgtctattt |
0 | AGUUCUUC | m8a | Disrupted | -0.209 | -0.037 |
0.16 |
| hsa-miR-4277 |
cctgaAGAACTGtctattt |
0 | GCAGUUCU | m7b | Disrupted | -0.191 | no TS |
2.25 |
| hsa-miR-4524b-3p |
cctgaagaaCTGTCTattt |
0 | GAGACAGG | m6b | Disrupted | -0.133 | no TS |
1.99 |
| hsa-miR-4645-3p |
cctgaagaACTGTCTattt |
0 | AGACAGUA | m7a | Disrupted | NA | NA | No effect |
| hsa-miR-5584-3p |
cctgAAGAACTgtctattt |
0 | UAGUUCUU | m7b | Disrupted | -0.088 | no TS |
1.56 |