SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001195434 |
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Gene Symbol: | MLF1 |
Description: | Homo sapiens myeloid leukemia factor 1 (MLF1), transcript variant 3, mRNA. |
Gene Location: | chr3(+):158288952-158324249 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.158605377T>A | COSN9139321 | AOCS-155-3-5 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3685 |
tttTAGGAAAaaaattttg |
0 | UUUCCUAC | m7a | (m6a->m7a) | no TS | -0.112000 |
-0.370000 |
hsa-miR-384 |
tttTAGGAATaaaattttg |
0 | AUUCCUAG | m7a | (m7a->m6a) | no TS | -0.110000 |
-0.360000 |
hsa-miR-590-3p |
ttttaggaaTAAAATTttg |
5 |
UAAUUUUA | m7b | (m7b->m6c) | -0.067000 | -0.028000 |
0.940000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.158605424T>C | COSN1270578 | HX12T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-19a-5p |
tatttaatGCAAAACTctt |
4 |
AGUUUUGC | m8a | Created | -0.178000 | -0.386000 |
-0.060000 |
hsa-miR-19b-1-5p |
tatttaatGCAAAACTctt |
4 |
AGUUUUGC | m8a | Created | -0.178000 | -0.386000 |
-1.640000 |
hsa-miR-19b-2-5p |
tatttaatGCAAAACTctt |
4 |
AGUUUUGC | m8a | Created | -0.178000 | -0.386000 |
-1.370000 |
hsa-miR-323a-3p |
tattTAATGTaaaactctt |
4 |
CACAUUAC | m6b | Disrupted | -0.068000 | -0.001000 |
0.240000 |
hsa-miR-33a-5p |
tatttAATGCAaaactctt |
2 |
GUGCAUUG | m6b | Created | -0.143000 | -0.260000 |
-1.320000 |
hsa-miR-33b-5p |
tatttAATGCAaaactctt |
2 |
GUGCAUUG | m6b | Created | -0.143000 | -0.260000 |
-0.140000 |
hsa-miR-3680-3p |
tatttaATGCAAAActctt |
5 |
UUUUGCAU | m8a | Created | -0.185000 | -0.428000 |
-1.940000 |
hsa-miR-557 |
tatttaaTGCAAAactctt |
0 | GUUUGCAC | m6b | Created | no TS | -0.087000 |
-9.150000 |
hsa-miR-19a-5p |
tatttaatGCAAAACTctt |
0 | AGUUUUGC | m8a | Created | -0.178 | -0.386 |
-0.06 |
hsa-miR-19b-1-5p |
tatttaatGCAAAACTctt |
0 | AGUUUUGC | m8a | Created | -0.178 | -0.386 |
-1.64 |
hsa-miR-19b-2-5p |
tatttaatGCAAAACTctt |
0 | AGUUUUGC | m8a | Created | -0.178 | -0.386 |
-1.37 |
hsa-miR-323a-3p |
tattTAATGTaaaactctt |
0 | CACAUUAC | m6b | Disrupted | -0.068 | -0.001 |
0.24 |
hsa-miR-33a-5p |
tatttAATGCAaaactctt |
0 | GUGCAUUG | m6b | Created | -0.143 | -0.26 |
-1.32 |
hsa-miR-33b-5p |
tatttAATGCAaaactctt |
0 | GUGCAUUG | m6b | Created | -0.143 | -0.26 |
-0.14 |
hsa-miR-3680-3p |
tatttaATGCAAAActctt |
0 | UUUUGCAU | m8a | Created | -0.185 | -0.428 |
-1.94 |
hsa-miR-557 |
tatttaaTGCAAAactctt |
0 | GUUUGCAC | m6b | Created | no TS | -0.087 |
-9.15 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.158605554A>C | 13_165 | SJMB025_D | Medulloblastoma | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-944 |
tcacttATAATTagttata |
0 | AAAUUAUU | m6b | Disrupted | 0.022 | -0.026 |
0.01 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.158605811C>A | COSN9761206 | C0007T | [kidney][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-493-5p |
gctaATGTACAtgattgtt |
3 |
UUGUACAU | m7b | Disrupted | -0.139000 | no TS |
6.220000 |
hsa-miR-5696 |
gctaatgTAAATGAttgtt |
0 | CUCAUUUA | m7b | Created | no TS | -0.025000 |
-2.140000 |
hsa-miR-96-3p |
gctaatgtACATGATTgtt |
2 |
AAUCAUGU | m8a | Disrupted | -0.161000 | no TS |
10.850000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.158605866C>T | COSN9139322 | AOCS-147-1-1 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3653 |
tattacaTTCTTAatattc |
3 |
CUAAGAAG | m6b | Disrupted | -0.150000 | -0.148000 |
0.820000 |
hsa-miR-3658 |
tattacaTTCTTAAtattc |
4 |
UUUAAGAA | m7b | Disrupted | -0.047000 | 0.017000 |
0.170000 |
hsa-miR-4477a |
tattacattCTTAATAttc |
5 |
CUAUUAAG | m7b | (m7b->m6c) | -0.101000 | -0.051000 | No effect |
hsa-miR-548c-3p |
tattacATTTTTaatattc |
0 | CAAAAAUC | m6b | Created | no TS | 0.094000 |
-0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.158605933C>T | MLF1_E9_UTR_3 | SJHYPO046_D | Hypodiploid_ALL | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4428 |
ttctacTCTCCTTtcccac |
6 |
CAAGGAGA | m7b | Disrupted | -0.088 | no TS |
2.58 |
hsa-miR-5192 |
ttctACTCTCCTttcccac |
1 |
AGGAGAGU | m8a | Disrupted | -0.192 | no TS |
1.67 |
hsa-miR-5197-3p |
ttctaCTCTTCTTtcccac |
0 | AAGAAGAG | m8a | Created | no TS | -0.116 |
-0.01 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.158606098T>C | COSN9139323 | AOCS-162-1-1 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.158606286C>A | COSN1924249 | RK107_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1262 |
gaaaaaagCACCCAaaaat |
0 | AUGGGUGA | m6b | Created | no TS | -0.208000 |
-1.410000 |
hsa-miR-1275 |
gaaaaaagCCCCCAaaaat |
1 |
GUGGGGGA | m6b | Disrupted | -0.240000 | no TS |
0.030000 |
hsa-miR-3119 |
gaaAAAAGCCcccaaaaat |
1 |
UGGCUUUU | m7b | (m7b->m6b) | -0.275000 | -0.088000 |
6.100000 |
hsa-miR-4260 |
gaaaaaagcCCCCAAaaat |
1 |
CUUGGGGC | m6b | Disrupted | -0.186000 | no TS |
1.890000 |
hsa-miR-4488 |
gaaaaaaGCCCCCaaaaat |
0 | AGGGGGCG | m6b | Disrupted | -0.300000 | no TS |
14.370000 |
hsa-miR-450a-3p |
gaaaaaagcCCCCAAaaat |
1 |
AUUGGGGA | m6b | Disrupted | -0.184000 | no TS |
0.120000 |
hsa-miR-4665-5p |
gaaaaaagCCCCCAaaaat |
1 |
CUGGGGGA | m6b | Disrupted | -0.240000 | no TS | No effect |
hsa-miR-4697-5p |
gaaaaaaGCCCCCaaaaat |
0 | AGGGGGCG | m6b | Disrupted | -0.300000 | no TS |
8.530000 |
hsa-miR-4701-3p |
gaaaaaagCACCCAaaaat |
0 | AUGGGUGA | m6b | Created | no TS | -0.208000 |
-2.460000 |
hsa-miR-5572 |
gaaaaaagcCCCCAAaaat |
1 |
GUUGGGGU | m6b | Disrupted | -0.180000 | no TS |
1.880000 |
hsa-miR-1262 |
gaaaaaagCACCCAaaaat |
0 | AUGGGUGA | m6b | Created | no TS | -0.208 |
-1.41 |
hsa-miR-1275 |
gaaaaaagCCCCCAaaaat |
0 | GUGGGGGA | m6b | Disrupted | -0.24 | no TS |
0.03 |
hsa-miR-3119 |
gaaAAAAGCCcccaaaaat |
1 |
UGGCUUUU | m7b | (m7b->m6b) | -0.275 | -0.088 |
6.1 |
hsa-miR-4260 |
gaaaaaagcCCCCAAaaat |
0 | CUUGGGGC | m6b | Disrupted | -0.186 | no TS |
1.89 |
hsa-miR-4488 |
gaaaaaaGCCCCCaaaaat |
0 | AGGGGGCG | m6b | Disrupted | -0.3 | no TS |
14.37 |
hsa-miR-450a-3p |
gaaaaaagcCCCCAAaaat |
0 | AUUGGGGA | m6b | Disrupted | -0.184 | no TS |
0.12 |
hsa-miR-4665-5p |
gaaaaaagCCCCCAaaaat |
0 | CUGGGGGA | m6b | Disrupted | -0.24 | no TS | No effect |
hsa-miR-4697-5p |
gaaaaaaGCCCCCaaaaat |
0 | AGGGGGCG | m6b | Disrupted | -0.3 | no TS |
8.53 |
hsa-miR-4701-3p |
gaaaaaagCACCCAaaaat |
0 | AUGGGUGA | m6b | Created | no TS | -0.208 |
-2.46 |
hsa-miR-5572 |
gaaaaaagcCCCCAAaaat |
0 | GUUGGGGU | m6b | Disrupted | -0.18 | no TS |
1.88 |