SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_053002 |
---|---|
Gene Symbol: | MED12L |
Description: | Homo sapiens mediator complex subunit 12-like (MED12L), mRNA. |
Gene Location: | chr3(+):150804675-151154465 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.151433158A>G | 11_5164 | 2542 | Breast cancer | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.151433695G>C | COSN7826001 | 8035591 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-127-5p |
agctgGCTTCAGattccag |
0 | CUGAAGCU | m7a | Created | NA | NA |
-0.020000 |
|
hsa-miR-216a |
agctggctTGAGATTccag |
11 |
UAAUCUCA | m7b | Disrupted | 0.017000 | no TS |
0.010000 |
|
hsa-miR-4786-3p |
agcTGGCTTCAgattccag |
0 | UGAAGCCA | m8a | Created | no TS | -0.162000 |
-4.030000 |
|
hsa-miR-513c-5p |
agctggCTTGAGAttccag |
2 |
UUCUCAAG | m7b | Disrupted | 0.032000 | 0.003000 | No effect | |
hsa-miR-514b-5p |
agctggCTTGAGAttccag |
2 |
UUCUCAAG | m7b | Disrupted | 0.005000 | -0.006000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.151434127G>T | COSN5523834 | RK125_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3919 |
atgTTCTCTGttatttcat |
2 |
GCAGAGAA | m7b | (m7b->m6b) | -0.017000 | no TS |
0.030000 |
|
hsa-miR-3925-5p |
atGTTCTCTTttatttcat |
2 |
AAGAGAAC | m8a | (m7a->m8a) | -0.034000 | -0.060000 |
-0.030000 |
|
hsa-miR-4311 |
atgtTCTCTTTtatttcat |
0 | GAAAGAGA | m7b | Created | no TS | 0.015000 |
-0.070000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.151434296T>G | COSN1921512 | RK147_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3156-5p |
aataatttAGATCTTcctg |
0 | AAAGAUCU | m7b | Created | -0.063000 | -0.043000 |
-0.010000 |
|
hsa-miR-4799-5p |
aataATTTAGATcttcctg |
1 |
AUCUAAAU | m8a | Created | 0.131000 | 0.204000 |
-0.020000 |
|
hsa-miR-3156-5p |
aataatttAGATCTTcctg |
0 | AAAGAUCU | m7b | Created | -0.063000 | -0.043000 |
-0.010000 |
|
hsa-miR-4799-5p |
aataATTTAGATcttcctg |
1 |
AUCUAAAU | m8a | Created | 0.131000 | 0.204000 |
-0.020000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.151434400T>C | COSN1269874 | HX13T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-19a-3p |
actgcTTTGCACActgtga |
16 |
UGUGCAAA | m8a | Created | -0.199000 | -0.080000 |
-0.070000 |
|
hsa-miR-19b-3p |
actgcTTTGCACActgtga |
16 |
UGUGCAAA | m8a | Created | -0.199000 | -0.080000 |
-0.330000 |
|
hsa-miR-3177-5p |
actgcttTGTACACtgtga |
2 |
UGUGUACA | m7b | Disrupted | -0.048000 | -0.038000 |
5.090000 |
|
hsa-miR-330-3p |
acTGCTTTGCacactgtga |
0 | GCAAAGCA | m8a | (m7a->m8a) | 0.153000 | 0.181000 |
2.030000 |
|
hsa-miR-4302 |
actgctttgCACACTGtga |
0 | CCAGUGUG | m7b | (m6c->m7b) | no TS | -0.002000 |
-0.240000 |
|
hsa-miR-518a-5p |
actgCTTTGCAcactgtga |
4 |
CUGCAAAG | m7b | Created | 0.065000 | 0.176000 |
-0.030000 |
|
hsa-miR-520d-5p |
actgCTTTGTAcactgtga |
10 |
CUACAAAG | m7b | Disrupted | 0.198000 | 0.023000 |
1.000000 |
|
hsa-miR-524-5p |
actgCTTTGTAcactgtga |
10 |
CUACAAAG | m7b | Disrupted | 0.163000 | 0.016000 |
0.260000 |
|
hsa-miR-527 |
actgCTTTGCAcactgtga |
4 |
CUGCAAAG | m7b | Created | 0.065000 | 0.176000 |
-0.030000 |
|
hsa-miR-548aw |
actgcTTTGCACactgtga |
16 |
GUGCAAAA | m7a | Created | 0.093000 | 0.093000 |
-1.510000 |
|
hsa-miR-648 |
actgctttGCACACTgtga |
0 | AAGUGUGC | m7b | Created | no TS | -0.074000 |
-0.740000 |
|
hsa-miR-19a-3p |
actgcTTTGCACActgtga |
16 |
UGUGCAAA | m8a | Created | -0.199000 | -0.080000 |
-0.070000 |
|
hsa-miR-19b-3p |
actgcTTTGCACActgtga |
16 |
UGUGCAAA | m8a | Created | -0.199000 | -0.080000 |
-0.330000 |
|
hsa-miR-3177-5p |
actgcttTGTACACtgtga |
2 |
UGUGUACA | m7b | Disrupted | -0.048000 | -0.038000 |
5.090000 |
|
hsa-miR-330-3p |
acTGCTTTGCacactgtga |
0 | GCAAAGCA | m8a | (m7a->m8a) | 0.153000 | 0.181000 |
2.030000 |
|
hsa-miR-4302 |
actgctttgCACACTGtga |
0 | CCAGUGUG | m7b | (m6c->m7b) | no TS | -0.002000 |
-0.240000 |
|
hsa-miR-518a-5p |
actgCTTTGCAcactgtga |
4 |
CUGCAAAG | m7b | Created | 0.065000 | 0.176000 |
-0.030000 |
|
hsa-miR-520d-5p |
actgCTTTGTAcactgtga |
10 |
CUACAAAG | m7b | Disrupted | 0.198000 | 0.023000 |
1.000000 |
|
hsa-miR-524-5p |
actgCTTTGTAcactgtga |
10 |
CUACAAAG | m7b | Disrupted | 0.163000 | 0.016000 |
0.260000 |
|
hsa-miR-527 |
actgCTTTGCAcactgtga |
4 |
CUGCAAAG | m7b | Created | 0.065000 | 0.176000 |
-0.030000 |
|
hsa-miR-548aw |
actgcTTTGCACactgtga |
16 |
GUGCAAAA | m7a | Created | 0.093000 | 0.093000 |
-1.510000 |
|
hsa-miR-648 |
actgctttGCACACTgtga |
0 | AAGUGUGC | m7b | Created | no TS | -0.074000 |
-0.740000 |
|
hsa-miR-19a-3p |
actgcTTTGCACActgtga |
0 | UGUGCAAA | m8a | Created | -0.199 | -0.08 |
-0.07 |
|
hsa-miR-19b-3p |
actgcTTTGCACActgtga |
0 | UGUGCAAA | m8a | Created | -0.199 | -0.08 |
-0.33 |
|
hsa-miR-3177-5p |
actgcttTGTACACtgtga |
15 |
UGUGUACA | m7b | Disrupted | -0.048 | -0.038 |
5.09 |
|
hsa-miR-330-3p |
acTGCTTTGCacactgtga |
0 | GCAAAGCA | m8a | (m7a->m8a) | 0.153 | 0.181 |
2.03 |
|
hsa-miR-4302 |
actgctttgCACACTGtga |
0 | CCAGUGUG | m7b | (m6c->m7b) | no TS | -0.002 |
-0.24 |
|
hsa-miR-518a-5p |
actgCTTTGCAcactgtga |
0 | CUGCAAAG | m7b | Created | 0.065 | 0.176 |
-0.03 |
|
hsa-miR-520d-5p |
actgCTTTGTAcactgtga |
13 |
CUACAAAG | m7b | Disrupted | 0.198 | 0.023 |
1 |
|
hsa-miR-524-5p |
actgCTTTGTAcactgtga |
13 |
CUACAAAG | m7b | Disrupted | 0.163 | 0.016 |
0.26 |
|
hsa-miR-527 |
actgCTTTGCAcactgtga |
0 | CUGCAAAG | m7b | Created | 0.065 | 0.176 |
-0.03 |
|
hsa-miR-548aw |
actgcTTTGCACactgtga |
0 | GUGCAAAA | m7a | Created | 0.093 | 0.093 |
-1.51 |
|
hsa-miR-648 |
actgctttGCACACTgtga |
0 | AAGUGUGC | m7b | Created | no TS | -0.074 |
-0.74 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.151435076T>C | COSN14476484 | 8057700 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.151435391G>T | COSN1269876 | HX16T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-330-3p |
caatgcgtaGCTTTGacca |
0 | GCAAAGCA | m6b | Disrupted | 0.153000 | 0.075000 |
0.010000 |
|
hsa-miR-330-3p |
caatgcgtaGCTTTGacca |
0 | GCAAAGCA | m6b | Disrupted | 0.153000 | 0.075000 |
0.010000 |
|
hsa-miR-330-3p |
caatgcgtaGCTTTGacca |
0 | GCAAAGCA | m6b | Disrupted | 0.153 | 0.075 |
0.01 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.151435504G>A | COSN7623609 | ASHPC_0001_Pa_P_2 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1249 |
cccAAGGGCGctattccac |
0 | ACGCCCUU | m7b | (m7b->m6b) | -0.130000 | no TS |
7.700000 |
|
hsa-miR-33b-3p |
cccaagGGCACTattccac |
0 | CAGUGCCU | m6b | Created | no TS | -0.084000 |
-6.720000 |
|
hsa-miR-371a-3p |
cccaagGGCACTattccac |
0 | AAGUGCCG | m6b | Created | no TS | -0.128000 |
-0.340000 |
|
hsa-miR-371b-3p |
cccaaGGGCACTattccac |
0 | AAGUGCCC | m7b | Created | no TS | -0.293000 | No effect | |
hsa-miR-515-3p |
cccaagGGCACTattccac |
0 | GAGUGCCU | m6b | Created | no TS | -0.091000 |
-0.630000 |
|
hsa-miR-519e-3p |
cccaagGGCACTattccac |
0 | AAGUGCCU | m6b | Created | no TS | -0.087000 |
-3.530000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.151435880A>T | COSN7826003 | 8052598 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.151436529C>A | COSN8315992 | TCGA-A8-A09Z-01 | [breast][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-126-5p |
tcatcagtTAATAATGcat |
0 | CAUUAUUA | m8a | Created | no TS | -0.038000 |
-2.140000 |
hsa-miR-3545-3p |
tcatCAGTTCAtaatgcat |
11 |
UUGAACUG | m7b | Disrupted | -0.377000 | -0.129000 |
0.160000 |
hsa-miR-4477a |
tcatcagTTAATAatgcat |
1 |
CUAUUAAG | m6b | Created | 0.154000 | 0.164000 |
-0.090000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
151435830 | rs200230903 | T | T |
hsa-miR-190a-3p hsa-miR-410-3p hsa-miR-5011-5p |
4 8 8 |
attATATATAAta aTTATATAtaata atTATATATAata |
Disrupted Disrupted Disrupted |
N N N |
0.085 0.089 0.074 |
A |
hsa-miR-126-5p hsa-miR-374a-5p hsa-miR-374b-5p hsa-miR-4795-3p |
5 9 9 10 |
attataAATAATA ATTATAAataata ATTATAAataata attataAATAATA |
Created Created Created Created |
N N N N |
0.114 0.071 0.071 0.077 |
|||
151435832 | rs67349236 | - | - |
hsa-miR-190a-3p hsa-miR-5011-5p |
4 4 |
cattATATATAAtagacct catTATATATAatagacct |
Unknown Unknown |
N N |
0.085 0.062 |
TAAT |
hsa-miR-1277-5p hsa-miR-4477a hsa-miR-889-3p |
4 8 3 |
cattATATATTAataatagacct cattatataTTAATAAtagacct cattatATATTAAtaatagacct |
Unknown Unknown Unknown |
N N N |
0.068 0.087 0.064 |
|||
151435878 | rs10703665 | - | - |
hsa-miR-5571-5p |
1 |
ataaAGAATTAatgaaatg |
Unknown |
N |
0.034 |
TAAT |
hsa-miR-10a-3p hsa-miR-4477a |
1 1 |
ataaaGAATTTAataatgaaatg ataaagaatTTAATAAtgaaatg |
Unknown Unknown |
N N |
0.015 0.08 |