SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_053002
Gene Symbol: MED12L
Description: Homo sapiens mediator complex subunit 12-like (MED12L), mRNA.
Gene Location: chr3(+):150804675-151154465
Browse Associations

Somatic mutations that impact miRNA target sites




Mutation Mutation ID Sample Name Cancer Type
chr3:g.151433158A>G 11_5164 2542 Breast cancer
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr3:g.151433695G>C COSN7826001 8035591 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-127-5p agctgGCTTCAGattccag
0 CUGAAGCU m7a Created NA NA -0.020000
hsa-miR-216a agctggctTGAGATTccag
11
UAAUCUCA m7b Disrupted 0.017000 no TS 0.010000
hsa-miR-4786-3p agcTGGCTTCAgattccag
0 UGAAGCCA m8a Created no TS -0.162000 -4.030000
hsa-miR-513c-5p agctggCTTGAGAttccag
2
UUCUCAAG m7b Disrupted 0.032000 0.003000 No effect
hsa-miR-514b-5p agctggCTTGAGAttccag
2
UUCUCAAG m7b Disrupted 0.005000 -0.006000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr3:g.151434127G>T COSN5523834 RK125_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3919 atgTTCTCTGttatttcat
2
GCAGAGAA m7b (m7b->m6b) -0.017000 no TS 0.030000
hsa-miR-3925-5p atGTTCTCTTttatttcat
2
AAGAGAAC m8a (m7a->m8a) -0.034000 -0.060000 -0.030000
hsa-miR-4311 atgtTCTCTTTtatttcat
0 GAAAGAGA m7b Created no TS 0.015000 -0.070000

Mutation Mutation ID Sample Name Cancer Type
chr3:g.151434296T>G COSN1921512 RK147_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3156-5p aataatttAGATCTTcctg
0 AAAGAUCU m7b Created -0.063000 -0.043000 -0.010000
hsa-miR-4799-5p aataATTTAGATcttcctg
1
AUCUAAAU m8a Created 0.131000 0.204000 -0.020000
hsa-miR-3156-5p aataatttAGATCTTcctg
0 AAAGAUCU m7b Created -0.063000 -0.043000 -0.010000
hsa-miR-4799-5p aataATTTAGATcttcctg
1
AUCUAAAU m8a Created 0.131000 0.204000 -0.020000

Mutation Mutation ID Sample Name Cancer Type
chr3:g.151434400T>C COSN1269874 HX13T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-19a-3p actgcTTTGCACActgtga
16
UGUGCAAA m8a Created -0.199000 -0.080000 -0.070000
hsa-miR-19b-3p actgcTTTGCACActgtga
16
UGUGCAAA m8a Created -0.199000 -0.080000 -0.330000
hsa-miR-3177-5p actgcttTGTACACtgtga
2
UGUGUACA m7b Disrupted -0.048000 -0.038000 5.090000
hsa-miR-330-3p acTGCTTTGCacactgtga
0 GCAAAGCA m8a (m7a->m8a) 0.153000 0.181000 2.030000
hsa-miR-4302 actgctttgCACACTGtga
0 CCAGUGUG m7b (m6c->m7b) no TS -0.002000 -0.240000
hsa-miR-518a-5p actgCTTTGCAcactgtga
4
CUGCAAAG m7b Created 0.065000 0.176000 -0.030000
hsa-miR-520d-5p actgCTTTGTAcactgtga
10
CUACAAAG m7b Disrupted 0.198000 0.023000 1.000000
hsa-miR-524-5p actgCTTTGTAcactgtga
10
CUACAAAG m7b Disrupted 0.163000 0.016000 0.260000
hsa-miR-527 actgCTTTGCAcactgtga
4
CUGCAAAG m7b Created 0.065000 0.176000 -0.030000
hsa-miR-548aw actgcTTTGCACactgtga
16
GUGCAAAA m7a Created 0.093000 0.093000 -1.510000
hsa-miR-648 actgctttGCACACTgtga
0 AAGUGUGC m7b Created no TS -0.074000 -0.740000
hsa-miR-19a-3p actgcTTTGCACActgtga
16
UGUGCAAA m8a Created -0.199000 -0.080000 -0.070000
hsa-miR-19b-3p actgcTTTGCACActgtga
16
UGUGCAAA m8a Created -0.199000 -0.080000 -0.330000
hsa-miR-3177-5p actgcttTGTACACtgtga
2
UGUGUACA m7b Disrupted -0.048000 -0.038000 5.090000
hsa-miR-330-3p acTGCTTTGCacactgtga
0 GCAAAGCA m8a (m7a->m8a) 0.153000 0.181000 2.030000
hsa-miR-4302 actgctttgCACACTGtga
0 CCAGUGUG m7b (m6c->m7b) no TS -0.002000 -0.240000
hsa-miR-518a-5p actgCTTTGCAcactgtga
4
CUGCAAAG m7b Created 0.065000 0.176000 -0.030000
hsa-miR-520d-5p actgCTTTGTAcactgtga
10
CUACAAAG m7b Disrupted 0.198000 0.023000 1.000000
hsa-miR-524-5p actgCTTTGTAcactgtga
10
CUACAAAG m7b Disrupted 0.163000 0.016000 0.260000
hsa-miR-527 actgCTTTGCAcactgtga
4
CUGCAAAG m7b Created 0.065000 0.176000 -0.030000
hsa-miR-548aw actgcTTTGCACactgtga
16
GUGCAAAA m7a Created 0.093000 0.093000 -1.510000
hsa-miR-648 actgctttGCACACTgtga
0 AAGUGUGC m7b Created no TS -0.074000 -0.740000
hsa-miR-19a-3p actgcTTTGCACActgtga
0 UGUGCAAA m8a Created -0.199 -0.08 -0.07
hsa-miR-19b-3p actgcTTTGCACActgtga
0 UGUGCAAA m8a Created -0.199 -0.08 -0.33
hsa-miR-3177-5p actgcttTGTACACtgtga
15
UGUGUACA m7b Disrupted -0.048 -0.038 5.09
hsa-miR-330-3p acTGCTTTGCacactgtga
0 GCAAAGCA m8a (m7a->m8a) 0.153 0.181 2.03
hsa-miR-4302 actgctttgCACACTGtga
0 CCAGUGUG m7b (m6c->m7b) no TS -0.002 -0.24
hsa-miR-518a-5p actgCTTTGCAcactgtga
0 CUGCAAAG m7b Created 0.065 0.176 -0.03
hsa-miR-520d-5p actgCTTTGTAcactgtga
13
CUACAAAG m7b Disrupted 0.198 0.023 1
hsa-miR-524-5p actgCTTTGTAcactgtga
13
CUACAAAG m7b Disrupted 0.163 0.016 0.26
hsa-miR-527 actgCTTTGCAcactgtga
0 CUGCAAAG m7b Created 0.065 0.176 -0.03
hsa-miR-548aw actgcTTTGCACactgtga
0 GUGCAAAA m7a Created 0.093 0.093 -1.51
hsa-miR-648 actgctttGCACACTgtga
0 AAGUGUGC m7b Created no TS -0.074 -0.74


Mutation Mutation ID Sample Name Cancer Type
chr3:g.151435076T>C COSN14476484 8057700 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr3:g.151435391G>T COSN1269876 HX16T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-330-3p caatgcgtaGCTTTGacca
0 GCAAAGCA m6b Disrupted 0.153000 0.075000 0.010000
hsa-miR-330-3p caatgcgtaGCTTTGacca
0 GCAAAGCA m6b Disrupted 0.153000 0.075000 0.010000
hsa-miR-330-3p caatgcgtaGCTTTGacca
0 GCAAAGCA m6b Disrupted 0.153 0.075 0.01

Mutation Mutation ID Sample Name Cancer Type
chr3:g.151435504G>A COSN7623609 ASHPC_0001_Pa_P_2 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1249 cccAAGGGCGctattccac
0 ACGCCCUU m7b (m7b->m6b) -0.130000 no TS 7.700000
hsa-miR-33b-3p cccaagGGCACTattccac
0 CAGUGCCU m6b Created no TS -0.084000 -6.720000
hsa-miR-371a-3p cccaagGGCACTattccac
0 AAGUGCCG m6b Created no TS -0.128000 -0.340000
hsa-miR-371b-3p cccaaGGGCACTattccac
0 AAGUGCCC m7b Created no TS -0.293000 No effect
hsa-miR-515-3p cccaagGGCACTattccac
0 GAGUGCCU m6b Created no TS -0.091000 -0.630000
hsa-miR-519e-3p cccaagGGCACTattccac
0 AAGUGCCU m6b Created no TS -0.087000 -3.530000


Mutation Mutation ID Sample Name Cancer Type
chr3:g.151435880A>T COSN7826003 8052598 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr3:g.151436529C>A COSN8315992 TCGA-A8-A09Z-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-126-5p tcatcagtTAATAATGcat
0 CAUUAUUA m8a Created no TS -0.038000 -2.140000
hsa-miR-3545-3p tcatCAGTTCAtaatgcat
11
UUGAACUG m7b Disrupted -0.377000 -0.129000 0.160000
hsa-miR-4477a tcatcagTTAATAatgcat
1
CUAUUAAG m6b Created 0.154000 0.164000 -0.090000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
151435830 rs200230903 T T hsa-miR-190a-3p
hsa-miR-410-3p
hsa-miR-5011-5p
4
8
8
attATATATAAta
aTTATATAtaata
atTATATATAata
Disrupted
Disrupted
Disrupted
N
N
N
0.085
0.089
0.074
A hsa-miR-126-5p
hsa-miR-374a-5p
hsa-miR-374b-5p
hsa-miR-4795-3p
5
9
9
10
attataAATAATA
ATTATAAataata
ATTATAAataata
attataAATAATA
Created
Created
Created
Created
N
N
N
N
0.114
0.071
0.071
0.077
151435832 rs67349236 - - hsa-miR-190a-3p
hsa-miR-5011-5p
4
4
cattATATATAAtagacct
catTATATATAatagacct
Unknown
Unknown
N
N
0.085
0.062
TAAT hsa-miR-1277-5p
hsa-miR-4477a
hsa-miR-889-3p
4
8
3
cattATATATTAataatagacct
cattatataTTAATAAtagacct
cattatATATTAAtaatagacct
Unknown
Unknown
Unknown
N
N
N
0.068
0.087
0.064
151435878 rs10703665 - - hsa-miR-5571-5p
1
ataaAGAATTAatgaaatg
Unknown
N
0.034
TAAT hsa-miR-10a-3p
hsa-miR-4477a
1
1
ataaaGAATTTAataatgaaatg
ataaagaatTTAATAAtgaaatg
Unknown
Unknown
N
N
0.015
0.08

Genome Browser