SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_001197320 |
---|---|
Gene Symbol: | MCL1 |
Description: | Homo sapiens myeloid cell leukemia sequence 1 (BCL2-related) (MCL1), nuclear gene encoding mitochondrial protein, transcript variant 3, mRNA. |
Gene Location: | chr1(-):150547026-150552214 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.150574689A>T | COSN15367460 | 0084_CRUK_PC_0084_T1_DNA | [prostate][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4999-5p |
ttctggttATACAGCtgta |
0 | UGCUGUAU | m7b | Created | no TS | -0.207000 | No effect |
hsa-miR-568 |
ttctggTTATACAgctgta |
0 | AUGUAUAA | m7b | Created | no TS | 0.000000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.150576137G>A | COSN7177049 | 8064632 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.150576609C>T | 0_82 | Prostate cancer | ||||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3201 |
tttttCATATCCttttgaa |
0 | GGGAUAUG | m7b | Created | no TS | -0.239 |
-4.48 |
hsa-miR-4791 |
tttttCATATCCttttgaa |
0 | UGGAUAUG | m7b | Created | no TS | -0.192 |
-4.35 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.150576678T>C | COSN4743875 | tumor_4116738 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][diffuse_large_B_cell_lymphoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-let-7a-3p |
aaaaTTGTATAtattttta |
1 |
CUAUACAA | m7b | Disrupted | -0.066000 | 0.041000 |
1.290000 |
hsa-let-7b-3p |
aaaaTTGTATAtattttta |
1 |
CUAUACAA | m7b | Disrupted | -0.066000 | 0.041000 |
0.010000 |
hsa-let-7f-1-3p |
aaaaTTGTATAtattttta |
1 |
CUAUACAA | m7b | Disrupted | -0.047000 | 0.060000 |
0.150000 |
hsa-miR-1185-1-3p |
aaaatTGTATATattttta |
0 | AUAUACAG | m7a | Disrupted | NA | NA |
0.010000 |
hsa-miR-1185-2-3p |
aaaatTGTATATattttta |
0 | AUAUACAG | m7a | Disrupted | NA | NA | No effect |
hsa-miR-1277-5p |
aaaattgtATATATTTtta |
11 |
AAAUAUAU | m8a | Disrupted | -0.007000 | no TS |
2.110000 |
hsa-miR-4666a-3p |
aaaATTGTATatattttta |
1 |
CAUACAAU | m7b | (m7b->m6c) | -0.030000 | 0.092000 |
0.110000 |
hsa-miR-5011-5p |
aaaattgTATATATtttta |
10 |
UAUAUAUA | m7b | Disrupted | 0.019000 | no TS |
0.570000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.150576796T>C | COSN4900754 | CPCG_0020_Pr_P_F0 | [prostate][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-548a-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005000 | 0.031000 | No effect |
hsa-miR-548ab |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.036000 | 0.021000 |
-0.360000 |
hsa-miR-548ak |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005000 | 0.031000 |
0.010000 |
hsa-miR-548am-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005000 | 0.031000 |
-0.010000 |
hsa-miR-548ap-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005000 | 0.031000 |
0.040000 |
hsa-miR-548aq-5p |
ccatgattcTTACTTTatt |
0 | GAAAGUAA | m7b | (m7b->m6b) | -0.015000 | 0.028000 | No effect |
hsa-miR-548ar-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005000 | 0.031000 |
0.120000 |
hsa-miR-548as-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.015000 | 0.028000 |
0.010000 |
hsa-miR-548au-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005000 | 0.031000 |
0.040000 |
hsa-miR-548b-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.015000 | 0.028000 |
-0.650000 |
hsa-miR-548c-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005000 | 0.031000 |
-0.010000 |
hsa-miR-548d-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.015000 | 0.028000 |
-0.560000 |
hsa-miR-548h-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005000 | 0.031000 | No effect |
hsa-miR-548i |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.026000 | 0.025000 |
-0.020000 |
hsa-miR-548j |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005000 | 0.031000 |
0.020000 |
hsa-miR-548o-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005000 | 0.031000 |
-0.010000 |
hsa-miR-548w |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005000 | 0.031000 |
0.010000 |
hsa-miR-548y |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.015000 | 0.028000 | No effect |
hsa-miR-559 |
ccatgattcTTACTTTAtt |
0 | UAAAGUAA | m8a | (m8a->m7a) | -0.015000 | 0.028000 | No effect |
hsa-miR-562 |
ccatgattcCTACTTTatt |
0 | AAAGUAGC | m7a | (m6a->m7a) | NA | NA | No effect |
hsa-miR-548a-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005 | 0.031 | No effect |
hsa-miR-548ab |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.036 | 0.021 |
-0.36 |
hsa-miR-548ak |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005 | 0.031 |
0.01 |
hsa-miR-548am-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005 | 0.031 |
-0.01 |
hsa-miR-548ap-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005 | 0.031 |
0.04 |
hsa-miR-548aq-5p |
ccatgattcTTACTTTatt |
0 | GAAAGUAA | m7b | (m7b->m6b) | -0.015 | 0.028 | No effect |
hsa-miR-548ar-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005 | 0.031 |
0.12 |
hsa-miR-548as-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.015 | 0.028 |
0.01 |
hsa-miR-548au-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005 | 0.031 |
0.04 |
hsa-miR-548b-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.015 | 0.028 |
-0.65 |
hsa-miR-548c-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005 | 0.031 |
-0.01 |
hsa-miR-548d-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.015 | 0.028 |
-0.56 |
hsa-miR-548h-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005 | 0.031 | No effect |
hsa-miR-548i |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.026 | 0.025 |
-0.02 |
hsa-miR-548j |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005 | 0.031 |
0.02 |
hsa-miR-548o-5p |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005 | 0.031 |
-0.01 |
hsa-miR-548w |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.005 | 0.031 |
0.01 |
hsa-miR-548y |
ccatgattcTTACTTTatt |
0 | AAAAGUAA | m7b | (m7b->m6b) | -0.015 | 0.028 | No effect |
hsa-miR-559 |
ccatgattcTTACTTTAtt |
0 | UAAAGUAA | m8a | (m8a->m7a) | -0.015 | 0.028 | No effect |
hsa-miR-562 |
ccatgattcCTACTTTatt |
0 | AAAGUAGC | m7a | (m6a->m7a) | NA | NA | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.150576867T>A | COSN7177051 | 8062308 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3192 |
cttTCCCAGAatacttctt |
1 |
UCUGGGAG | m7a | (m6b->m7a) | -0.123000 | -0.247000 |
-0.320000 |
hsa-miR-4314 |
cttTCCCAGAatacttctt |
0 | CUCUGGGA | m7b | (m6c->m7b) | no TS | -0.317000 |
-0.010000 |
hsa-miR-4646-5p |
ctTTCCCAGTatacttctt |
2 |
ACUGGGAA | m8a | (m8a->m7b) | -0.197000 | -0.307000 |
-0.090000 |
hsa-miR-4778-5p |
ctttccCAGAATacttctt |
0 | AAUUCUGU | m6b | Created | no TS | -0.016000 |
-1.190000 |
hsa-miR-630 |
ctttcccAGAATACTtctt |
0 | AGUAUUCU | m8a | Created | no TS | -0.060000 |
-6.180000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.150577276A>C | COSN8319677 | PCSI_0022_Pa_P | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4278 |
tagagttgCCCCCTAGcaa |
0 | CUAGGGGG | m8a | Created | no TS | -0.238000 |
-0.010000 |
hsa-miR-4488 |
tagagttGCCCCCTagcaa |
0 | AGGGGGCG | m7a | Created | NA | NA | No effect |
hsa-miR-4697-5p |
tagagttGCCCCCTagcaa |
0 | AGGGGGCG | m7a | Created | NA | NA |
-0.010000 |
hsa-miR-4716-3p |
tagagttgCCCCCTagcaa |
0 | AAGGGGGA | m6b | Created | no TS | -0.210000 | No effect |