SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_001197320
Gene Symbol: MCL1
Description: Homo sapiens myeloid cell leukemia sequence 1 (BCL2-related) (MCL1), nuclear gene encoding mitochondrial protein, transcript variant 3, mRNA.
Gene Location: chr1(-):150547026-150552214
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr1:g.150574689A>T COSN15367460 0084_CRUK_PC_0084_T1_DNA [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4999-5p ttctggttATACAGCtgta
0 UGCUGUAU m7b Created no TS -0.207000 No effect
hsa-miR-568 ttctggTTATACAgctgta
0 AUGUAUAA m7b Created no TS 0.000000 No effect


Mutation Mutation ID Sample Name Cancer Type
chr1:g.150576137G>A COSN7177049 8064632 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr1:g.150576609C>T 0_82 Prostate cancer
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3201 tttttCATATCCttttgaa
0 GGGAUAUG m7b Created no TS -0.239 -4.48
hsa-miR-4791 tttttCATATCCttttgaa
0 UGGAUAUG m7b Created no TS -0.192 -4.35

Mutation Mutation ID Sample Name Cancer Type
chr1:g.150576678T>C COSN4743875 tumor_4116738 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][diffuse_large_B_cell_lymphoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-let-7a-3p aaaaTTGTATAtattttta
1
CUAUACAA m7b Disrupted -0.066000 0.041000 1.290000
hsa-let-7b-3p aaaaTTGTATAtattttta
1
CUAUACAA m7b Disrupted -0.066000 0.041000 0.010000
hsa-let-7f-1-3p aaaaTTGTATAtattttta
1
CUAUACAA m7b Disrupted -0.047000 0.060000 0.150000
hsa-miR-1185-1-3p aaaatTGTATATattttta
0 AUAUACAG m7a Disrupted NA NA 0.010000
hsa-miR-1185-2-3p aaaatTGTATATattttta
0 AUAUACAG m7a Disrupted NA NA No effect
hsa-miR-1277-5p aaaattgtATATATTTtta
11
AAAUAUAU m8a Disrupted -0.007000 no TS 2.110000
hsa-miR-4666a-3p aaaATTGTATatattttta
1
CAUACAAU m7b (m7b->m6c) -0.030000 0.092000 0.110000
hsa-miR-5011-5p aaaattgTATATATtttta
10
UAUAUAUA m7b Disrupted 0.019000 no TS 0.570000

Mutation Mutation ID Sample Name Cancer Type
chr1:g.150576796T>C COSN4900754 CPCG_0020_Pr_P_F0 [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-548a-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005000 0.031000 No effect
hsa-miR-548ab ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.036000 0.021000 -0.360000
hsa-miR-548ak ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005000 0.031000 0.010000
hsa-miR-548am-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005000 0.031000 -0.010000
hsa-miR-548ap-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005000 0.031000 0.040000
hsa-miR-548aq-5p ccatgattcTTACTTTatt
0 GAAAGUAA m7b (m7b->m6b) -0.015000 0.028000 No effect
hsa-miR-548ar-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005000 0.031000 0.120000
hsa-miR-548as-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.015000 0.028000 0.010000
hsa-miR-548au-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005000 0.031000 0.040000
hsa-miR-548b-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.015000 0.028000 -0.650000
hsa-miR-548c-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005000 0.031000 -0.010000
hsa-miR-548d-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.015000 0.028000 -0.560000
hsa-miR-548h-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005000 0.031000 No effect
hsa-miR-548i ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.026000 0.025000 -0.020000
hsa-miR-548j ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005000 0.031000 0.020000
hsa-miR-548o-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005000 0.031000 -0.010000
hsa-miR-548w ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005000 0.031000 0.010000
hsa-miR-548y ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.015000 0.028000 No effect
hsa-miR-559 ccatgattcTTACTTTAtt
0 UAAAGUAA m8a (m8a->m7a) -0.015000 0.028000 No effect
hsa-miR-562 ccatgattcCTACTTTatt
0 AAAGUAGC m7a (m6a->m7a) NA NA No effect
hsa-miR-548a-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005 0.031 No effect
hsa-miR-548ab ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.036 0.021 -0.36
hsa-miR-548ak ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005 0.031 0.01
hsa-miR-548am-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005 0.031 -0.01
hsa-miR-548ap-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005 0.031 0.04
hsa-miR-548aq-5p ccatgattcTTACTTTatt
0 GAAAGUAA m7b (m7b->m6b) -0.015 0.028 No effect
hsa-miR-548ar-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005 0.031 0.12
hsa-miR-548as-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.015 0.028 0.01
hsa-miR-548au-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005 0.031 0.04
hsa-miR-548b-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.015 0.028 -0.65
hsa-miR-548c-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005 0.031 -0.01
hsa-miR-548d-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.015 0.028 -0.56
hsa-miR-548h-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005 0.031 No effect
hsa-miR-548i ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.026 0.025 -0.02
hsa-miR-548j ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005 0.031 0.02
hsa-miR-548o-5p ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005 0.031 -0.01
hsa-miR-548w ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.005 0.031 0.01
hsa-miR-548y ccatgattcTTACTTTatt
0 AAAAGUAA m7b (m7b->m6b) -0.015 0.028 No effect
hsa-miR-559 ccatgattcTTACTTTAtt
0 UAAAGUAA m8a (m8a->m7a) -0.015 0.028 No effect
hsa-miR-562 ccatgattcCTACTTTatt
0 AAAGUAGC m7a (m6a->m7a) NA NA No effect

Mutation Mutation ID Sample Name Cancer Type
chr1:g.150576867T>A COSN7177051 8062308 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3192 cttTCCCAGAatacttctt
1
UCUGGGAG m7a (m6b->m7a) -0.123000 -0.247000 -0.320000
hsa-miR-4314 cttTCCCAGAatacttctt
0 CUCUGGGA m7b (m6c->m7b) no TS -0.317000 -0.010000
hsa-miR-4646-5p ctTTCCCAGTatacttctt
2
ACUGGGAA m8a (m8a->m7b) -0.197000 -0.307000 -0.090000
hsa-miR-4778-5p ctttccCAGAATacttctt
0 AAUUCUGU m6b Created no TS -0.016000 -1.190000
hsa-miR-630 ctttcccAGAATACTtctt
0 AGUAUUCU m8a Created no TS -0.060000 -6.180000

Mutation Mutation ID Sample Name Cancer Type
chr1:g.150577276A>C COSN8319677 PCSI_0022_Pa_P [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4278 tagagttgCCCCCTAGcaa
0 CUAGGGGG m8a Created no TS -0.238000 -0.010000
hsa-miR-4488 tagagttGCCCCCTagcaa
0 AGGGGGCG m7a Created NA NA No effect
hsa-miR-4697-5p tagagttGCCCCCTagcaa
0 AGGGGGCG m7a Created NA NA -0.010000
hsa-miR-4716-3p tagagttgCCCCCTagcaa
0 AAGGGGGA m6b Created no TS -0.210000 No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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