SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_002379
Gene Symbol: MATN1
Description: Homo sapiens matrilin 1, cartilage matrix protein (MATN1), mRNA.
Gene Location: chr1(-):31184123-31196432
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr1:g.30711599C>A COSN6033630 RK053_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1207-5p cgttcttCCCTGCCcggtg
2
UGGCAGGG m7b Disrupted -0.316000 -0.137000 0.010000
hsa-miR-3622b-5p cgttcttCCATGCCcggtg
0 AGGCAUGG m7b Created no TS -0.175000 -0.010000
hsa-miR-4253 cgttcttcCATGCCCggtg
1
AGGGCAUG m7b Created -0.121000 -0.251000 No effect
hsa-miR-4763-3p cgttcttCCCTGCCcggtg
2
AGGCAGGG m7b Disrupted -0.288000 -0.137000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr1:g.30711703A>T COSN10047184 C0031T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1273a cattagcgGTCGCCatggc
0 GGGCGACA m6b Created no TS -0.186000 -17.440000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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