SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_002379 |
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Gene Symbol: | MATN1 |
Description: | Homo sapiens matrilin 1, cartilage matrix protein (MATN1), mRNA. |
Gene Location: | chr1(-):31184123-31196432 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.30711599C>A | COSN6033630 | RK053_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1207-5p |
cgttcttCCCTGCCcggtg |
2 |
UGGCAGGG | m7b | Disrupted | -0.316000 | -0.137000 |
0.010000 |
hsa-miR-3622b-5p |
cgttcttCCATGCCcggtg |
0 | AGGCAUGG | m7b | Created | no TS | -0.175000 |
-0.010000 |
hsa-miR-4253 |
cgttcttcCATGCCCggtg |
1 |
AGGGCAUG | m7b | Created | -0.121000 | -0.251000 | No effect |
hsa-miR-4763-3p |
cgttcttCCCTGCCcggtg |
2 |
AGGCAGGG | m7b | Disrupted | -0.288000 | -0.137000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.30711703A>T | COSN10047184 | C0031T | [kidney][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1273a |
cattagcgGTCGCCatggc |
0 | GGGCGACA | m6b | Created | no TS | -0.186000 |
-17.440000 |