SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001009909 |
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Gene Symbol: | LUZP2 |
Description: | Homo sapiens leucine zipper protein 2 (LUZP2), transcript variant 1, mRNA. |
Gene Location: | chr11(+):24518555-25104186 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25078789G>T | COSN8641428 | 2275_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25078844T>C | COSN8440171 | AOCS-134-3-9 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1294 |
ataACCTCACtgaattgaa |
0 | UGUGAGGU | m7b | (m6b->m7b) | no TS | -0.301000 |
-0.420000 |
|
hsa-miR-4276 |
ataaccTCACTGAattgaa |
0 | CUCAGUGA | m7b | Created | no TS | -0.311000 |
-0.560000 |
|
hsa-miR-5190 |
ataaccTCACTGaattgaa |
0 | CCAGUGAC | m6b | Created | no TS | -0.128000 |
-0.030000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25079273C>G | COSN5904939 | RK210_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-136-5p |
tcatATGGAGaaaatattt |
1 |
ACUCCAUU | m6b | Created | 0.072000 | -0.030000 |
-0.060000 |
|
hsa-miR-2355-3p |
tcatatGGACAAaatattt |
2 |
AUUGUCCU | m6b | Disrupted | -0.115000 | no TS | No effect | |
hsa-miR-4646-3p |
tcatatGGACAAaatattt |
2 |
AUUGUCCC | m6b | Disrupted | -0.119000 | no TS | No effect | |
hsa-miR-515-5p |
tcataTGGAGAAaatattt |
6 |
UUCUCCAA | m7a | Created | -0.084000 | -0.190000 | No effect | |
hsa-miR-519e-5p |
tcataTGGAGAAaatattt |
6 |
UUCUCCAA | m7a | Created | -0.073000 | -0.179000 | No effect | |
hsa-miR-629-3p |
tcatatGGAGAAaatattt |
0 | GUUCUCCC | m6b | Created | no TS | -0.089000 |
-1.460000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25079644G>A | COSN4721003 | tumor_4177434 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-223-5p |
caaaaaAATACACtcatga |
0 | CGUGUAUU | m7b | Created | no TS | -0.070000 |
-0.160000 |
|
hsa-miR-4280 |
caaaaaaaTACACTCatga |
0 | GAGUGUAG | m7a | Created | NA | NA |
-0.290000 |
|
hsa-miR-4658 |
caaaaaaatACACTCAtga |
0 | GUGAGUGU | m7b | (m6c->m7b) | no TS | -0.158000 |
-1.080000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25079914G>A | COSN15368122 | 0084_CRUK_PC_0084_T1_DNA | [prostate][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1277-5p |
aataaaaATATATTaaagg |
0 | AAAUAUAU | m7b | Created | 0.055000 | 0.182000 | No effect | |
hsa-miR-374c-5p |
aataaaaaTGTATTAaagg |
0 | AUAAUACA | m7b | Disrupted | -0.120000 | -0.145000 |
0.160000 |
|
hsa-miR-655 |
aataaaaaTGTATTAaagg |
0 | AUAAUACA | m7b | Disrupted | -0.151000 | -0.145000 |
2.220000 |
|
hsa-miR-889 |
aataaaaatATATTAAagg |
2 |
UUAAUAUC | m7a | (m6b->m7a) | 0.269000 | 0.375000 |
-0.050000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25080031G>A | COSN6999506 | 8047881 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25080297G>T | COSN1526033 | RK022_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-139-5p |
ccaACTGTAGgatgaggta |
2 |
UCUACAGU | m7b | (m7b->m6b) | 0.010000 | no TS |
0.090000 |
|
hsa-miR-154-3p |
ccaactGTATGATgaggta |
1 |
AAUCAUAC | m7b | Created | -0.067000 | -0.037000 |
-0.010000 |
|
hsa-miR-155-3p |
ccaacTGTAGGAtgaggta |
2 |
CUCCUACA | m7b | Disrupted | 0.003000 | no TS |
0.110000 |
|
hsa-miR-4793-5p |
ccaactgtAGGATGaggta |
2 |
ACAUCCUG | m6b | Disrupted | 0.008000 | -0.039000 |
2.940000 |
|
hsa-miR-485-3p |
ccaacTGTATGAtgaggta |
4 |
GUCAUACA | m7b | Created | -0.035000 | 0.060000 | No effect | |
hsa-miR-487a |
ccaactGTATGATgaggta |
1 |
AAUCAUAC | m7b | Created | -0.067000 | -0.009000 | No effect | |
hsa-miR-539-3p |
ccaacTGTATGATgaggta |
4 |
AUCAUACA | m8a | Created | -0.035000 | 0.023000 |
-0.050000 |
|
hsa-miR-139-5p |
ccaACTGTAGgatgaggta |
2 |
UCUACAGU | m7b | (m7b->m6b) | 0.01 | no TS |
0.09 |
|
hsa-miR-154-3p |
ccaactGTATGATgaggta |
0 | AAUCAUAC | m7b | Created | -0.067 | -0.037 |
-0.01 |
|
hsa-miR-155-3p |
ccaacTGTAGGAtgaggta |
2 |
CUCCUACA | m7b | Disrupted | 0.003 | no TS |
0.11 |
|
hsa-miR-4793-5p |
ccaactgtAGGATGaggta |
0 | ACAUCCUG | m6b | Disrupted | 0.008 | -0.039 |
2.94 |
|
hsa-miR-485-3p |
ccaacTGTATGAtgaggta |
0 | GUCAUACA | m7b | Created | -0.035 | 0.06 | No effect | |
hsa-miR-487a |
ccaactGTATGATgaggta |
0 | AAUCAUAC | m7b | Created | -0.067 | -0.009 | No effect | |
hsa-miR-539-3p |
ccaacTGTATGATgaggta |
0 | AUCAUACA | m8a | Created | -0.035 | 0.023 |
-0.05 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25080332T>G | COSN8534753 | tumor_4163639 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][diffuse_large_B_cell_lymphoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-302a-5p |
ttaagcagGTTTAAGTtag |
2 |
ACUUAAAC | m8a | Disrupted | 0.322000 | 0.189000 |
0.590000 |
|
hsa-miR-649 |
ttaagCAGGTTTaagttag |
0 | AAACCUGU | m7a | Disrupted | NA | NA | No effect | |
hsa-miR-652-5p |
ttaagcAGGGTTaagttag |
2 |
CAACCCUA | m6b | Created | -0.058000 | -0.068000 |
-1.170000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25080371T>C | COSN1526034 | RK023_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-205-3p |
ttaggtatCTGAAATgcat |
2 |
GAUUUCAG | m7b | Disrupted | 0.146000 | 0.043000 | No effect | |
hsa-miR-3942-3p |
ttaggtATCTGAAAtgcat |
2 |
UUUCAGAU | m8a | Disrupted | -0.105000 | -0.217000 | No effect | |
hsa-miR-5100 |
ttaggtATCTGAAatgcat |
4 |
UUCAGAUC | m7a | Disrupted | -0.030000 | -0.086000 | No effect | |
hsa-miR-205-3p |
ttaggtatCTGAAATgcat |
0 | GAUUUCAG | m7b | Disrupted | 0.146 | 0.043 | No effect | |
hsa-miR-3942-3p |
ttaggtATCTGAAAtgcat |
0 | UUUCAGAU | m8a | Disrupted | -0.105 | -0.217 | No effect | |
hsa-miR-5100 |
ttaggtATCTGAAatgcat |
0 | UUCAGAUC | m7a | Disrupted | -0.03 | -0.086 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25080479C>T | COSN8440172 | AOCS-146-1-9 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1225-5p |
ccggcTACCCAaggaaaaa |
3 |
GUGGGUAC | m6b | Disrupted | -0.009000 | no TS |
0.050000 |
|
hsa-miR-196a-5p |
ccggCTACCTAaggaaaaa |
0 | UAGGUAGU | m7a | Created | no TS | -0.016000 |
-1.600000 |
|
hsa-miR-196b-5p |
ccggCTACCTAaggaaaaa |
0 | UAGGUAGU | m7a | Created | no TS | -0.016000 |
-0.980000 |
|
hsa-miR-197-5p |
ccggCTACCCaaggaaaaa |
3 |
CGGGUAGA | m6b | Disrupted | -0.040000 | no TS |
0.200000 |
|
hsa-miR-212-5p |
ccggctacCCAAGGaaaaa |
1 |
ACCUUGGC | m6b | Disrupted | -0.025000 | no TS |
2.890000 |
|
hsa-miR-3132 |
ccggCTACCCAaggaaaaa |
3 |
UGGGUAGA | m7a | Disrupted | -0.040000 | no TS |
0.530000 |
|
hsa-miR-3189-3p |
ccggctaCCCAAGGaaaaa |
1 |
CCCUUGGG | m7b | Disrupted | -0.137000 | no TS |
2.890000 |
|
hsa-miR-331-5p |
ccggcTACCTAaggaaaaa |
0 | CUAGGUAU | m6b | Created | no TS | 0.040000 |
-0.200000 |
|
hsa-miR-3927 |
ccggCTACCTaaggaaaaa |
0 | CAGGUAGA | m6b | Created | no TS | 0.000000 |
-0.280000 |
|
hsa-miR-502-5p |
ccggctaccCAAGGAaaaa |
1 |
AUCCUUGC | m6b | Disrupted | 0.008000 | no TS |
3.650000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25080927C>A | COSN6999507 | 8066440 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-126-5p |
gatatTAATAATGttttta |
0 | CAUUAUUA | m8a | Created | no TS | 0.126000 | No effect | |
hsa-miR-4477a |
gataTTAATAatgttttta |
2 |
CUAUUAAG | m6b | Created | 0.368000 | 0.525000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25081179A>T | COSN8440173 | AOCS-106-1-1 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3914 |
attacaGGTTCCTgccacc |
2 |
AAGGAACC | m7b | Created | -0.153000 | -0.161000 | No effect | |
hsa-miR-4722-5p |
attacaggtTCCTGCCacc |
0 | GGCAGGAG | m7a | (m6b->m7a) | NA | NA |
-0.490000 |
|
hsa-miR-4736 |
attacaggtACCTGCCacc |
2 |
AGGCAGGU | m7b | (m7b->m6c) | -0.046000 | 0.005000 |
1.190000 |
|
hsa-miR-649 |
attACAGGTTcctgccacc |
0 | AAACCUGU | m7b | (m6b->m7b) | no TS | 0.044000 | No effect | |
hsa-miR-657 |
attacaggtACCTGCCacc |
0 | GGCAGGUU | m7a | (m7a->m6b) | NA | NA | No effect | |
hsa-miR-873-5p |
attacagGTTCCTGCcacc |
0 | GCAGGAAC | m8a | Created | 0.047000 | 0.143000 |
-0.050000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25081218G>A | COSN6999508 | 8067180 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-340-3p |
tttttaataGAGACGGggt |
2 |
UCCGUCUC | m7b | (m7b->m6c) | -0.124000 | no TS |
0.770000 |
|
hsa-miR-4477a |
tttTTAATAGagacggggt |
2 |
CUAUUAAG | m7a | (m7a->m6a) | 0.368000 | 0.543000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25081295C>T | COSN6999509 | 8035543 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-149-3p |
agtctCCTCCCaaaatgct |
2 |
AGGGAGGG | m6b | Disrupted | 0.011000 | 0.021000 |
2.760000 |
|
hsa-miR-30b-3p |
agtctCCTCCCAaaatgct |
2 |
CUGGGAGG | m7b | Disrupted | 0.012000 | 0.092000 | No effect | |
hsa-miR-30c-1-3p |
agtctcCTCCCAaaatgct |
2 |
CUGGGAGA | m6b | Disrupted | 0.146000 | 0.143000 |
0.010000 |
|
hsa-miR-30c-2-3p |
agtctcCTCCCAaaatgct |
2 |
CUGGGAGA | m6b | Disrupted | 0.139000 | 0.139000 | No effect | |
hsa-miR-3122 |
agtctccTCCCAAaatgct |
2 |
GUUGGGAC | m6b | Disrupted | 0.113000 | 0.074000 |
0.010000 |
|
hsa-miR-3689a-3p |
agtctCCTCCCAaaatgct |
2 |
CUGGGAGG | m7b | Disrupted | 0.005000 | 0.085000 |
0.030000 |
|
hsa-miR-3689b-3p |
agtctCCTCCCAaaatgct |
2 |
CUGGGAGG | m7b | Disrupted | 0.002000 | 0.082000 |
0.010000 |
|
hsa-miR-3689c |
agtctCCTCCCAaaatgct |
2 |
CUGGGAGG | m7b | Disrupted | 0.002000 | 0.082000 |
0.010000 |
|
hsa-miR-3913-5p |
agtctccTCCCAAAatgct |
2 |
UUUGGGAC | m7a | Disrupted | 0.095000 | 0.056000 |
0.010000 |
|
hsa-miR-4728-5p |
agtctCCTCCCAaaatgct |
2 |
UGGGAGGG | m7a | Disrupted | -0.023000 | 0.004000 |
1.630000 |
|
hsa-miR-765 |
agtCTCCTCCcaaaatgct |
2 |
UGGAGGAG | m7b | (m7b->m6b) | -0.057000 | no TS |
1.590000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25081300A>G | ICGC_83DAD004-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-338-3p |
cctcccaaaATGCTGGgat |
0 | UCCAGCAU | m7b | (m7b->m6c) | -0.02 | no TS |
0.09 |
|
hsa-miR-4310 |
cctcccaaAATGCTGggat |
0 | GCAGCAUU | m7b | Disrupted | -0.148 | -0.232 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25081637T>G | COSN8218203 | ASHPC_0006_Pa_P | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3908 |
ggggcCATTGCTCacatat |
4 |
GAGCAAUG | m8a | Created | -0.068000 | -0.038000 |
-0.010000 |
|
hsa-miR-539-5p |
ggggccATTTCTCacatat |
4 |
GGAGAAAU | m7b | Disrupted | -0.036000 | -0.118000 |
0.020000 |
|
hsa-miR-5680 |
ggggcCATTTCTCacatat |
3 |
GAGAAAUG | m8a | Disrupted | 0.380000 | 0.281000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25081890C>A | COSN14854032 | LP6005334-DNA_C03 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-182-3p |
caaccAGAACCAacaattg |
2 |
UGGUUCUA | m7a | Disrupted | -0.177000 | -0.091000 |
0.010000 |
|
hsa-miR-218-1-3p |
caaccaGAACCAacaattg |
2 |
AUGGUUCC | m6b | Disrupted | -0.070000 | no TS |
1.460000 |
|
hsa-miR-659-3p |
caaccaGAACCAAcaattg |
2 |
CUUGGUUC | m7b | Disrupted | -0.096000 | no TS |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25082097C>T | COSN5825530 | SS6003323 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-183-3p |
tgaaTAATTCAgtcattca |
2 |
GUGAAUUA | m7b | Disrupted | -0.073000 | -0.069000 | No effect | |
hsa-miR-3136-5p |
tgaataatTCAGTCAttca |
2 |
CUGACUGA | m7b | Disrupted | -0.199000 | no TS | No effect | |
hsa-miR-4439 |
tgaataatTCAGTCAttca |
2 |
GUGACUGA | m7b | Disrupted | -0.208000 | no TS |
0.010000 |
|
hsa-miR-4513 |
tgaataatTCAGTCattca |
2 |
AGACUGAC | m6b | Disrupted | -0.114000 | no TS |
0.040000 |
|
hsa-miR-4680-3p |
tgaatAATTCAGtcattca |
2 |
UCUGAAUU | m7b | Disrupted | -0.082000 | no TS |
0.030000 |
|
hsa-miR-944 |
tgAATAATTTagtcattca |
4 |
AAAUUAUU | m8a | (m7a->m8a) | 0.725000 | 0.697000 |
-0.090000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25082164C>A | COSN8641429 | J88_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-101-5p |
actaggttGATAACTtttt |
3 |
CAGUUAUC | m7b | Created | -0.087000 | -0.249000 |
-0.100000 |
|
hsa-miR-4766-3p |
actaggTTGCTAacttttt |
4 |
AUAGCAAU | m6b | Disrupted | -0.224000 | -0.140000 |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25082264T>C | COSN5904940 | RK176_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-410 |
taagacaGTTATATgtaaa |
1 |
AAUAUAAC | m7b | Disrupted | -0.260000 | -0.197000 | No effect | |
hsa-miR-5580-3p |
taagacagtCATATGTaaa |
0 | CACAUAUG | m7b | (m6c->m7b) | -0.022000 | -0.190000 | No effect | |
hsa-miR-943 |
taagACAGTCAtatgtaaa |
0 | CUGACUGU | m7b | Created | -0.176000 | -0.373000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25082326T>C | COSN8440174 | AOCS-107-1-4 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4719 |
aaacgatATTTGTGAactt |
3 |
UCACAAAU | m8a | Disrupted | -0.154000 | 0.033000 |
0.350000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25082351T>G | COSN8942096 | SS6003320 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25082540T>A | COSN8218204 | PCSI_0279_Pa_P_526 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4680-5p |
caaactatGAGTTCatttg |
0 | AGAACUCU | m6b | Created | -0.120000 | -0.272000 |
-0.050000 |
|
hsa-miR-4789-3p |
caaacTATGTGTtcatttg |
3 |
CACACAUA | m7b | Disrupted | -0.122000 | no TS |
0.070000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr11:g.25082546T>C | COSN1130970 | HX13T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3646 |
atgtgTTCATTTggattgt |
3 |
AAAAUGAA | m7b | Disrupted | 0.342000 | 0.344000 | No effect | |
hsa-miR-3691-3p |
atgtgttcACTTGGattgt |
0 | ACCAAGUC | m6b | Created | no TS | -0.157000 |
-0.350000 |
|
hsa-miR-3646 |
atgtgTTCATTTggattgt |
3 |
AAAAUGAA | m7b | Disrupted | 0.342 | 0.344 | No effect | |
hsa-miR-3691-3p |
atgtgttcACTTGGattgt |
0 | ACCAAGUC | m6b | Created | no TS | -0.157 |
-0.35 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.25082551A>G | COSN4721004 | tumor_4158726 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
25078949 | rs113682903 | A | G |
hsa-miR-6746-5p |
0 |
TCTCCCGgttcat |
Created |
N |
-0.325 |
A |
hsa-miR-203b-3p hsa-miR-30c-1-3p hsa-miR-30c-2-3p hsa-miR-3192-5p hsa-miR-6731-5p hsa-miR-6788-5p hsa-miR-6878-5p hsa-miR-8085 |
0 |
tctccCAGTTCAt TCTCCCAgttcat TCTCCCAgttcat tCTCCCAGttcat TCTCCCAgttcat TCTCCCAgttcat TCTCCCAgttcat TCTCCCAgttcat |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N |
-0.167 -0.28 -0.28 -0.281 -0.156 -0.242 -0.163 -0.163 |
|||
25079797 | rs75793920 | T | T |
hsa-miR-182-3p hsa-miR-4799-5p |
2 2 |
tttgttTAGAACC tttgTTTAGAAcc |
Disrupted Disrupted |
N N |
-0.091 0.077 |
A |
hsa-miR-2116-5p hsa-miR-495-3p hsa-miR-5688 hsa-miR-7-1-3p hsa-miR-7-2-3p |
2 2 2 2 2 |
tttgtTAAGAACc TTTGTTAagaacc TTTGTTAagaacc TTTGTTAagaacc TTTGTTAagaacc |
Created Created Created Created Created |
N N N N N |
-0.012 0.11 0.116 0.117 0.117 |
|||
25079802 | rs183815593 | C | C |
hsa-miR-182-3p |
2 |
tTAGAACCttttt |
Disrupted |
N |
-0.091 |
25079914 | rs76067796 | A | G |
hsa-miR-153-5p hsa-miR-374c-5p hsa-miR-655-3p |
0 |
AAAAATGtattaa aaaaaTGTATTAA aaaaaTGTATTAA |
Created Created Created |
N N N |
0.044 0.025 -0.006 |
A |
hsa-miR-1277-5p hsa-miR-889-3p |
1 2 |
aaaaATATATTAa aaaaatATATTAA |
Disrupted Disrupted |
N N |
0.127 0.106 |
|||
25080310 | rs116630024 | G | G |
hsa-miR-589-3p |
2 |
gtataTGTTCTGA |
Disrupted |
N |
0.063 |
A |
hsa-miR-1277-5p hsa-miR-5011-5p |
2 2 |
gtATATATTctga gTATATATtctga |
Created Created |
N N |
0.217 0.219 |
|||
25080321 | rs112500675 | G | G |
hsa-miR-302a-5p |
1 |
gagcacGTTTAAG |
Disrupted |
N |
0.202 |
25080481 | rs200140899 | - | - |
hsa-miR-1225-5p hsa-miR-1229-5p hsa-miR-212-5p hsa-miR-3189-3p hsa-miR-502-5p |
3 3 1 1 1 |
TACCCAAggaaaa TACCCAAggaaaa tacCCAAGGAaaa taCCCAAGGAaaa taccCAAGGAAaa |
Unknown Unknown Unknown Unknown Unknown |
N N N N N |
-0.007 -0.012 -0.025 -0.054 0.008 |
G |
hsa-miR-204-5p hsa-miR-211-5p hsa-miR-4446-5p hsa-miR-4755-5p hsa-miR-4780 hsa-miR-5006-3p hsa-miR-623 hsa-miR-6780b-3p |
1 1 1 1 1 1 1 1 |
tacccAAGGGAAaa tacccAAGGGAAaa tacccaAGGGAAAa tacccAAGGGAAAa taccCAAGGGAaaa tacccAAGGGAAAa taccCAAGGGAAaa taccCAAGGGAaaa |
Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown |
N N N N N N N N |
0.018 0.018 0.034 0.044 -0.032 0.076 -0.016 -0.036 |
|||
25080483 | rs112325161 | - | - |
hsa-miR-212-5p hsa-miR-3189-3p hsa-miR-502-5p |
1 1 1 |
cCCAAGGAaaaaa CCCAAGGAaaaaa ccCAAGGAAaaaa |
Unknown Unknown Unknown |
N N N |
0.001 0.001 0.001 |
A | |||||||||
25080483 | rs199931039 | G | G |
hsa-miR-212-5p hsa-miR-3189-3p hsa-miR-502-5p |
1 1 1 |
cCCAAGGAaaaaa CCCAAGGAaaaaa ccCAAGGAAaaaa |
Disrupted Disrupted Disrupted |
N N N |
-0.025 -0.137 0.008 |
A |
hsa-miR-578 hsa-miR-635 hsa-miR-6774-5p |
1 1 1 |
ccCAAGAAAaaaa CCCAAGAaaaaaa CCCAAGAaaaaaa |
Created Created Created |
N N N |
0.074 -0.024 -0.027 |
|||
25080484 | rs5790455 | - | - |
hsa-miR-212-5p hsa-miR-3189-3p hsa-miR-502-5p |
1 1 1 |
CCAAGGAaaaaaa CCAAGGAaaaaaa cCAAGGAAaaaaa |
Unknown Unknown Unknown |
N N N |
0.001 0.001 0.001 |
A | |||||||||
25080491 | rs201075645 | T | T |
hsa-miR-944 |
1 |
aaaaAATAATTAg |
Disrupted |
N |
0.284 |
A |
hsa-miR-4735-5p hsa-miR-4775 hsa-miR-590-3p |
2 2 2 |
aaaaaaAAATTAG aaaaaAAAATTAg aaaaaAAAATTAg |
Created Created Created |
N N N |
0.068 0.166 0.239 |
|||
25080869 | rs1374133 | T | C |
hsa-miR-873-5p |
0 |
ttatTTCCTGAaa |
Created |
N |
0.015 |
T |
hsa-miR-3942-3p |
0 |
ttatttTCTGAAA |
Disrupted |
N |
0.042 |
|||
25081122 | rs184245691 | T | T |
hsa-miR-204-3p hsa-miR-4646-5p hsa-miR-4747-5p hsa-miR-5196-5p hsa-miR-6828-5p |
1 1 1 1 1 |
tctgcTTCCCAGg tctgcTTCCCAGg tctgCTTCCCAgg tctgCTTCCCAgg tcTGCTTCCcagg |
Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N |
0.084 0.074 0.05 0.054 0.072 |
A |
hsa-miR-1229-5p hsa-miR-197-5p hsa-miR-3132 hsa-miR-6742-3p hsa-miR-6861-5p |
1 1 1 1 1 |
tctgCTACCCAgg tctgCTACCCAgg tctgCTACCCAgg tctgctACCCAGG tctgcTACCCAGg |
Created Created Created Created Created |
N N N N N |
0.021 -0.03 -0.012 0.002 0.054 |
|||
25081221 | rs187441382 | A | A |
hsa-miR-340-3p hsa-miR-6827-3p |
2 2 |
ataGAGACGGggt ataGAGACGGggt |
Disrupted Disrupted |
N N |
-0.124 -0.115 |
C |
hsa-miR-4707-5p hsa-miR-6741-3p hsa-miR-6822-3p |
2 2 2 |
atagaGCCGGGGt atAGAGCCGgggt aTAGAGCCggggt |
Created Created Created |
N N N |
-0.202 -0.11 -0.015 |
|||
25081222 | rs144187465 | C | C |
hsa-miR-340-3p hsa-miR-6827-3p |
2 2 |
taGAGACGGggtt taGAGACGGggtt |
Disrupted Disrupted |
N N |
-0.124 -0.115 |
T |
hsa-miR-3675-3p |
2 |
TAGAGATggggtt |
Created |
N |
0.042 |
|||
25081461 | rs1562262 | T | T |
hsa-miR-1277-5p |
2 |
aaaATATATTtag |
Disrupted |
N |
0.055 |
A |
hsa-miR-3606-3p hsa-miR-513a-3p hsa-miR-513c-3p |
2 2 2 |
aaaatAAATTTAg aaaatAAATTTAg aaaatAAATTTAg |
Created Created Created |
N N N |
0.177 0.174 0.174 |
|||
25081640 | rs189162389 | C | C |
hsa-miR-4501 hsa-miR-539-5p |
1 1 |
atttcTCACATAt ATTTCTCAcatat |
Disrupted Disrupted |
N N |
-0.043 0.082 |
T |
hsa-miR-379-3p hsa-miR-380-3p hsa-miR-411-3p hsa-miR-4495 |
1 1 1 1 |
atttcTTACATAt atttcTTACATAt atttcTTACATAt atttcTTACATAt |
Created Created Created Created |
N N N N |
0.023 0.028 0.023 0.04 |
|||
25082305 | rs184389093 | A | A |
hsa-miR-101-5p hsa-miR-5092 |
3 8 |
atgtgGATAACTg atGTGGATAactg |
Disrupted Disrupted |
N N |
-0.116 -0.173 |
T |
hsa-miR-6776-3p |
8 |
atGTGGTTAactg |
Created |
N |
-0.146 |
|||
25082508 | rs77771444 | G | G |
hsa-miR-329-3p hsa-miR-362-3p hsa-miR-3941 hsa-miR-603 |
3 3 3 3 |
ttagtcGTGTGTA ttagtcGTGTGTA ttagtcGTGTGTA ttagtcGTGTGTA |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
-0.143 -0.143 -0.156 -0.129 |
A |
hsa-miR-4643 hsa-miR-466 hsa-miR-4789-3p hsa-miR-6831-3p |
3 3 3 2 |
ttagtCATGTGTA ttagtcATGTGTA ttagtcATGTGTA TTAGTCAtgtgta |
Created Created Created Created |
N N N N |
-0.363 -0.12 -0.088 -0.142 |