SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001159740
Gene Symbol: LTA
Description: Homo sapiens lymphotoxin alpha (TNF superfamily, member 1) (LTA), transcript variant 2, mRNA.
Gene Location: chr6(+):31539875-31542098
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.31573888C>T COSN8400480 tumor_4120193 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1193 ctccctgaACCATCCCtga
 0 GGGAUGGU m8a Disrupted -0.195000 no TS 2.880000
hsa-miR-218-2-3p ctccctGAACCATccctga
 0 CAUGGUUC m7b Disrupted -0.093000 no TS 2.870000
hsa-miR-506-5p ctcCCTGAATcatccctga
 0 UAUUCAGG m7b (m6b->m7b) no TS -0.117000 -8.920000
hsa-miR-5187-5p ctccctgaaTCATCCCtga
 2
 UGGGAUGA m7b (m6c->m7b) -0.119000 -0.317000 No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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