| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_002339 |
|---|---|
| Gene Symbol: | LSP1 |
| Description: | Homo sapiens lymphocyte-specific protein 1 (LSP1), transcript variant 2, mRNA. |
| Gene Location: | chr11(+):1874199-1913493 |
| Browse Associations | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr11:g.1891791C>A | ICGC_ssm_v3_150315 | HCC85T | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3652 |
tctgcaggTCCAGCCGgct |
0 | CGGCUGGA | m8a | Disrupted | -0.45 | -0.351 |
1.89 |
| hsa-miR-4430 |
tctgcaggTCCAGCCggct |
0 | AGGCUGGA | m7b | Disrupted | -0.45 | -0.351 |
1.92 |
| hsa-miR-4535 |
tctgcAGGTCCAgccggct |
0 | GUGGACCU | m7b | Disrupted | -0.119 | no TS | No effect |
| hsa-miR-4718 |
tctgcagGTACAGCcggct |
0 | AGCUGUAC | m7b | Created | no TS | -0.125 |
-5.65 |
| hsa-miR-492 |
tctgCAGGTCCagccggct |
0 | AGGACCUG | m7b | Disrupted | -0.37 | no TS |
0.01 |
| hsa-miR-659-5p |
tctgcAGGTCCagccggct |
0 | AGGACCUU | m6b | Disrupted | -0.137 | no TS |
3.1 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr11:g.1891915G>T | ICGC_ssm_v3_100156 | HCC34T | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-2392 |
atgCCATCCTctgccacct |
0 | UAGGAUGG | m7b | (m6b->m7b) | no TS | -0.171 |
-1.2 |
| hsa-miR-2467-3p |
atgccatCCTCTGCcacct |
0 | AGCAGAGG | m7b | Created | no TS | -0.185 |
-5.25 |
| hsa-miR-3605-5p |
atgcCATCCTCtgccacct |
0 | UGAGGAUG | m7b | Created | no TS | -0.135 |
-3.91 |
| hsa-miR-885-3p |
atgccatcCGCTGCCacct |
0 | AGGCAGCG | m7b | Disrupted | -0.396 | no TS |
2.63 |