SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_002299
Gene Symbol: LCT
Description: Homo sapiens lactase (LCT), mRNA.
Gene Location: chr2(-):136545414-136594750
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Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.135788261C>A COSN8607512 J88_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-19a-5p accggccaCAAAACacctt
 0 AGUUUUGC m6b Created no TS 0.008000 -2.770000
hsa-miR-19b-1-5p accggccaCAAAACacctt
 0 AGUUUUGC m6b Created no TS 0.008000 -3.920000
hsa-miR-19b-2-5p accggccaCAAAACacctt
 0 AGUUUUGC m6b Created no TS 0.008000 -3.720000
hsa-miR-2113 accggcCACAAAacacctt
 0 AUUUGUGC m6b Created no TS -0.019000 -7.630000
hsa-miR-4474-3p accgGCCACAAaacacctt
 0 UUGUGGCU m7a Created no TS -0.178000 -1.800000
hsa-miR-663b accGGCCACCaaacacctt
 0 GGUGGCCC m7a (m7a->m6b) no TS -0.224000 -0.900000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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