SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_173464 |
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Gene Symbol: | L3MBTL4 |
Description: | Homo sapiens l(3)mbt-like 4 (Drosophila) (L3MBTL4), mRNA. |
Gene Location: | chr18(-):5954704-6414910 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr18:g.5954886G>T | COSN6130089 | RK308_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-142-5p |
atttCTTTATatctttacc |
0 | CAUAAAGU | m6b | Created | no TS | -0.030000 | No effect | |
hsa-miR-3156-5p |
atttctttAGATCTTTacc |
1 |
AAAGAUCU | m8a | Disrupted | -0.222000 | no TS |
3.230000 |
|
hsa-miR-340-5p |
atttCTTTATAtctttacc |
0 | UUAUAAAG | m7b | Created | no TS | -0.115000 |
-0.780000 |
|
hsa-miR-4509 |
atttCTTTAGatctttacc |
6 |
ACUAAAGG | m6b | Disrupted | -0.086000 | no TS |
0.260000 |
|
hsa-miR-4662a-3p |
atttctttaTATCTTTacc |
0 | AAAGAUAG | m7a | (m6a->m7a) | NA | NA |
-0.010000 |
|
hsa-miR-4744 |
attTCTTTAGAtctttacc |
6 |
UCUAAAGA | m8a | Disrupted | -0.292000 | no TS |
0.410000 |
|
hsa-miR-5590-3p |
atttCTTTATatctttacc |
0 | AAUAAAGU | m6b | Created | no TS | -0.040000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr18:g.5955719A>G | COSN8550786 | tumor_4163639 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][diffuse_large_B_cell_lymphoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1285-5p |
tcatGTGAGATttttgtgt |
7 |
GAUCUCAC | m7b | Disrupted | -0.178000 | no TS |
3.580000 |
|
hsa-miR-216a |
tcatgTGAGATTtttgtgt |
9 |
UAAUCUCA | m7b | Disrupted | -0.088000 | no TS |
3.900000 |
|
hsa-miR-548ac |
tcatgtgaGGTTTTTGtgt |
3 |
CAAAAACC | m8a | Created | 0.070000 | 0.062000 |
-1.510000 |
|
hsa-miR-548c-3p |
tcatgtgaGATTTTTGtgt |
8 |
CAAAAAUC | m8a | Disrupted | 0.072000 | no TS |
2.800000 |
|
hsa-miR-548d-3p |
tcatgtgaGGTTTTTGtgt |
3 |
CAAAAACC | m8a | Created | 0.080000 | 0.062000 |
-3.380000 |
|
hsa-miR-548h-3p |
tcatgtgaGGTTTTTGtgt |
3 |
CAAAAACC | m8a | Created | 0.070000 | 0.071000 |
-2.460000 |
|
hsa-miR-548z |
tcatgtgaGGTTTTTGtgt |
3 |
CAAAAACC | m8a | Created | 0.070000 | 0.071000 |
-2.460000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr18:g.5956030T>G | COSN14638908 | PCSI_0072_Pa_P_526 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
5955814 | rs183420581 | T | T |
hsa-miR-4490 hsa-miR-548ac hsa-miR-548ae hsa-miR-548ah-3p hsa-miR-548aj-3p hsa-miR-548am-3p hsa-miR-548aq-3p hsa-miR-548d-3p hsa-miR-548h-3p hsa-miR-548j-3p hsa-miR-548x-3p hsa-miR-548z |
2 3 3 3 3 3 3 3 3 3 3 3 |
atgtttTTACCAG atGTTTTTAccag atGTTTTTAccag atGTTTTTAccag atGTTTTTAccag atGTTTTTAccag atGTTTTTAccag atGTTTTTAccag atGTTTTTAccag atGTTTTTAccag atGTTTTTAccag atGTTTTTAccag |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N N N N N |
-0.179 0.07 0.073 0.076 0.073 0.076 0.073 0.08 0.07 0.073 0.073 0.07 |
C |
hsa-miR-3529-5p hsa-miR-379-5p hsa-miR-4451 hsa-miR-4650-3p hsa-miR-494-3p |
2 2 2 2 6 |
atgttTCTACCAg atgttTCTACCAg atgttTCTACCAg atgtTTCTACCAg ATGTTTCtaccag |
Created Created Created Created Created |
N N N N N |
-0.127 -0.13 -0.111 -0.245 -0.082 |