SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_033360
Gene Symbol: KRAS
Description: Homo sapiens v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog (KRAS), transcript variant b, mRNA.
Gene Location: chr12(-):25358179-25403854
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr12:g.25207349G>T ICGC_AA0B49B6-2A78-11E2-8335-12FD496BB9B8 CPCG_0102_Pr_P_P2 ProstateCancer(OICR,CA)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4279 tatttttAGGAGAGacggg
0 CUCUCCUC m7a Disrupted 0.029 0.029 0.01
hsa-miR-4684-5p tatttttaGTAGAGAcggg
0 CUCUCUAC m7b Created -0.109 -0.075 -0.01

Mutation Mutation ID Sample Name Cancer Type
chr12:g.25207929T>C ICGC_sm403719 RK100_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4678 ttttAATACCTgtaattcc
0 AAGGUAUU m7b Created -0.205 -0.197 No effect
hsa-miR-552 ttttaatACCTGTaattcc
0 AACAGGUG m6b Created no TS 0.003 7.65

Mutation Mutation ID Sample Name Cancer Type
chr12:g.25209810ACAAAG>- ICGC_436256 TCGA-BH-A18S-01A-11D-A12B-09 BreastInvasiveCarcinoma(TCGA,US)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-329 aagtcaaagacaaaGTGTGTaattatgta
0 AACACACC m6b Disrupted -0.160000 no TS 4.280000
hsa-miR-362-3p aagtcaaagacaaaGTGTGTaattatgta
0 AACACACC m6b Disrupted -0.160000 no TS 3.030000
hsa-miR-3941 aagtcaaagacaaaGTGTGTAAttatgta
0 UUACACAC m8a (m8a->m7a) -0.328000 0.055000 0.240000
hsa-miR-4775 aagtcaaagacaAAAATTAtgta
0 UUAAUUUU m7b Created 0.778000 0.735000 -0.050000
hsa-miR-603 aagtcaaagacaaAGTGTGTaattatgta
0 CACACACU m7b Disrupted -0.413000 no TS 0.090000
hsa-miR-329 aagtcaaagacaaaGTGTGTaattatgta
0 AACACACC m6b Disrupted -0.160000 no TS 4.280000
hsa-miR-362-3p aagtcaaagacaaaGTGTGTaattatgta
0 AACACACC m6b Disrupted -0.160000 no TS 3.030000
hsa-miR-3941 aagtcaaagacaaaGTGTGTAAttatgta
0 UUACACAC m8a (m8a->m7a) -0.328000 0.055000 0.240000
hsa-miR-4775 aagtcaaagacaAAAATTAtgta
0 UUAAUUUU m7b Created 0.778000 0.735000 -0.050000
hsa-miR-603 aagtcaaagacaaAGTGTGTaattatgta
0 CACACACU m7b Disrupted -0.413000 no TS 0.090000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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