SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001730
Gene Symbol: KLF5
Description: Homo sapiens Kruppel-like factor 5 (intestinal) (KLF5), mRNA.
Gene Location: chr13(+):73633141-73651676
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr13:g.73076207C>G COSN8420055 AOCS-145-1-6 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1322 acctaggcaGCATCATtta
 0 GAUGAUGC m7b (m6c->m7b) no TS -0.174000 -9.190000

Mutation Mutation ID Sample Name Cancer Type
chr13:g.73076712G>A COSN14546402 8061178 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-2054 ttaaagataATTACAaaat
 10
 CUGUAAUA m6b Created -0.125000 -0.144000 -0.750000
hsa-miR-944 ttaaagATAATTacaaaat
 11
 AAAUUAUU m6b Created -0.109000 -0.023000 -0.010000

Mutation Mutation ID Sample Name Cancer Type
chr13:g.73076872G>A COSN7417052 8033471 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Genome Browser