SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_018012 |
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Gene Symbol: | KIF26B |
Description: | Homo sapiens kinesin family member 26B (KIF26B), mRNA. |
Gene Location: | chr1(+):245318286-245866428 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr1:g.245702637C>T | COSN14654131 | PCSI_0090_Pa_X | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1909-3p |
gtggtCCCCTGCtccccag |
0 | CGCAGGGG | m7b | Created | no TS | -0.208000 |
-19.370000 |
|
hsa-miR-3144-5p |
gtGGTCCCCTgctccccag |
0 | AGGGGACC | m8a | (m7a->m8a) | -0.247000 | -0.275000 |
-0.950000 |
|
hsa-miR-4781-5p |
gtggtcCCCCGCTccccag |
2 |
UAGCGGGG | m7b | Disrupted | -0.260000 | no TS |
1.150000 |
|
hsa-miR-1909-3p |
gtggtCCCCTGCtccccag |
0 | CGCAGGGG | m7b | Created | no TS | -0.208000 |
-19.370000 |
|
hsa-miR-3144-5p |
gtGGTCCCCTgctccccag |
0 | AGGGGACC | m8a | (m7a->m8a) | -0.247000 | -0.275000 |
-0.950000 |
|
hsa-miR-4781-5p |
gtggtcCCCCGCTccccag |
2 |
UAGCGGGG | m7b | Disrupted | -0.260000 | no TS |
1.150000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.245702741G>A | COSN1101435 | BN24T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-365a-3p |
ggagcGGGCATTgagcgga |
0 | UAAUGCCC | m7b | Created | no TS | -0.118000 |
-0.300000 |
hsa-miR-365b-3p |
ggagcGGGCATTgagcgga |
0 | UAAUGCCC | m7b | Created | no TS | -0.118000 |
-0.300000 |
hsa-miR-365a-3p |
ggagcGGGCATTgagcgga |
0 | UAAUGCCC | m7b | Created | no TS | -0.118 |
-0.3 |
hsa-miR-365b-3p |
ggagcGGGCATTgagcgga |
0 | UAAUGCCC | m7b | Created | no TS | -0.118 |
-0.3 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
245702638 | rs140626338 | G | G |
hsa-miR-1343-5p hsa-miR-4781-5p hsa-miR-6090 hsa-miR-939-5p |
18 18 18 18 |
tcccccGCTCCCC tcCCCCGCTcccc tccccCGCTCCCc tcccccGCTCCCC |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
-0.248 -0.26 -0.202 -0.241 |
A |
hsa-miR-1275 hsa-miR-1296-3p hsa-miR-4447 hsa-miR-4472 hsa-miR-4481 hsa-miR-4525 hsa-miR-4665-5p hsa-miR-4723-5p hsa-miR-4745-5p hsa-miR-5010-5p hsa-miR-5698 hsa-miR-625-5p hsa-miR-6870-5p hsa-miR-7111-5p |
18 18 18 18 18 18 18 18 18 18 18 18 18 18 |
TCCCCCActcccc tcCCCCACTcccc tCCCCCACtcccc tCCCCCACtcccc tccCCCACTCccc TCCCCCActcccc TCCCCCActcccc TCCCCCActcccc tccCCCACTCccc TCCCCCActcccc TCCCCCActcccc TCCCCCActcccc TCCCCCActcccc TCCCCCActcccc |
Created Created Created Created Created Created Created Created Created Created Created Created Created Created |
N N N N N N N N N N N N N N |
-0.167 -0.177 -0.193 -0.193 -0.12 -0.167 -0.167 -0.163 -0.148 -0.174 -0.163 -0.171 -0.163 -0.184 |