SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
	Home	Search	Help	Download

Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

RefSeq ID:	NM_001199865
Gene Symbol:	KIF16B
Description:	Homo sapiens kinesin family member 16B (KIF16B), transcript variant 3, mRNA.
Gene Location:	chr20(-):16252748-16554079
Browse Associations

Somatic mutations that impact miRNA target sites

Mutation			Mutation ID		Sample Name		Cancer Type
chr20:g.16272534A>T			COSN10011857		C0031T		[kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-3122	attcTCCCAAatctaaatg	6	GUUGGGAC	m6b	Disrupted	-0.153000	-0.041000	0.440000
hsa-miR-376a-5p	attctcccaAATCTAaatg	8	GUAGAUUC	m6b	Disrupted	-0.150000	-0.144000	0.600000
hsa-miR-4760-5p	attctcccaAATCTAAAtg	0	UUUAGAUU	m8a	(m8a->m7a)	-0.098000	-0.004000	1.540000

Mutation			Mutation ID		Sample Name		Cancer Type
chr20:g.16272770T>A			COSN8610507		2296_T		[lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-32-3p	atttTAAATTatttcattg	9	CAAUUUAG	m6b	Disrupted	0.119000	0.073000	0.020000
hsa-miR-5692a	attttaaATTATTTcattg	8	CAAAUAAU	m7b	Disrupted	0.100000	0.093000	0.460000
hsa-miR-944	attttaAATAATTTcattg	1	AAAUUAUU	m8a	Created	-0.064000	-0.093000	-0.240000

Mutation			Mutation ID		Sample Name		Cancer Type
chr20:g.16272889T>G			COSN14484150		8067180		[pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-3943	caaagtgGGGGGCTtacca	0	UAGCCCCC	m7b	Created	no TS	-0.245000	-8.610000
hsa-miR-4286	caaAGTGGGGggcttacca	0	ACCCCACU	m7b	(m6c->m7b)	no TS	-0.150000	-0.550000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser