SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001105568
Gene Symbol: KIF13A
Description: Homo sapiens kinesin family member 13A (KIF13A), transcript variant 2, mRNA.
Gene Location: chr6(-):17760584-17987799
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.17759350A>C COSN5086051 HX35T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3646 aaaaactgTCATTTatatc
 0 AAAAUGAA m6b Created 0.036000 0.025000 No effect
hsa-miR-4645-3p aaaaACTGTCatttatatc
 0 AGACAGUA m6b Created no TS -0.190000 -0.260000
hsa-miR-582-5p aaaAACTGTAAtttatatc
 0 UUACAGUU m8a Disrupted -0.326000 -0.005000 0.010000

Mutation Mutation ID Sample Name Cancer Type
chr6:g.17759427G>A COSN9311918 8057643 [pancreas][NS][carcinoid-endocrine_tumour][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-335-3p taATGAAAAActgctgttc
 0 UUUUUCAU m8a (m7b->m8a) -0.061000 -0.122000 -0.260000
hsa-miR-4328 taatgaAAAACTGctgttc
 0 CCAGUUUU m7b Created -0.156000 -0.246000 -2.050000
hsa-miR-646 taatgaaaAGCTGCTgttc
 0 AAGCAGCU m7b Disrupted -0.254000 no TS 2.960000

Mutation Mutation ID Sample Name Cancer Type
chr6:g.17760242G>T 9_71519 CRC-7-Tumor Colorectal adenocarcinoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-5003-3p gcaGAAAAGTttatagaat
 16
 UACUUUUC m7b (m6c->m7b) no TS -0.051 0.75

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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