SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_001168377 |
---|---|
Gene Symbol: | KIAA0319 |
Description: | Homo sapiens KIAA0319 (KIAA0319), transcript variant 3, mRNA. |
Gene Location: | chr6(-):24544331-24646383 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.24544863A>T | COSN15439786 | AOCS-088-1-0 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-34c-3p |
acagTAGTGATcagaaagt |
3 |
AAUCACUA | m7b | Disrupted | 0.017000 | no TS |
5.060000 |
hsa-miR-4539 |
acagtagtGTTCAGaaagt |
0 | GCUGAACU | m6b | Created | no TS | -0.043000 |
-0.580000 |
hsa-miR-4762-3p |
acagtagtgATCAGAAagt |
2 |
CUUCUGAU | m7b | (m7b->m6b) | 0.010000 | 0.047000 |
3.350000 |
hsa-miR-34c-3p |
acagTAGTGATcagaaagt |
3 |
AAUCACUA | m7b | Disrupted | 0.017000 | no TS |
5.060000 |
hsa-miR-4539 |
acagtagtGTTCAGaaagt |
0 | GCUGAACU | m6b | Created | no TS | -0.043000 |
-0.580000 |
hsa-miR-4762-3p |
acagtagtgATCAGAAagt |
2 |
CUUCUGAU | m7b | (m7b->m6b) | 0.010000 | 0.047000 |
3.350000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.24545079A>G | COSN14725587 | CHC322T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.24545374G>A | COSN6316676 | RK128_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-106a-5p |
acatttacCACTTTatgta |
1 |
AAAAGUGC | m6b | Created | -0.155000 | -0.098000 | No effect |
hsa-miR-142-5p |
acatttaccACTTTATGta |
0 | CAUAAAGU | m8a | (m7a->m8a) | no TS | 0.117000 |
-0.200000 |
hsa-miR-17-5p |
acatttacCACTTTatgta |
1 |
CAAAGUGC | m6b | Created | -0.155000 | -0.098000 | No effect |
hsa-miR-20b-5p |
acatttacCACTTTatgta |
1 |
CAAAGUGC | m6b | Created | -0.166000 | -0.109000 | No effect |
hsa-miR-3609 |
acatttacCACTTTatgta |
1 |
CAAAGUGA | m6b | Created | 0.009000 | 0.059000 |
-0.330000 |
hsa-miR-4796-3p |
acatttaCCACTTTAtgta |
1 |
UAAAGUGG | m8a | Created | 0.002000 | -0.046000 | No effect |
hsa-miR-518a-3p |
acatttacCGCTTTatgta |
0 | GAAAGCGC | m6b | Disrupted | -0.087000 | no TS |
0.210000 |
hsa-miR-518b |
acatttacCGCTTTatgta |
0 | CAAAGCGC | m6b | Disrupted | -0.087000 | no TS |
0.260000 |
hsa-miR-518c-3p |
acatttacCGCTTTatgta |
0 | CAAAGCGC | m6b | Disrupted | -0.087000 | no TS |
0.090000 |
hsa-miR-518d-3p |
acatttacCGCTTTatgta |
0 | CAAAGCGC | m6b | Disrupted | -0.087000 | no TS |
0.080000 |
hsa-miR-518f-3p |
acatttacCGCTTTatgta |
0 | GAAAGCGC | m6b | Disrupted | -0.087000 | no TS |
0.270000 |
hsa-miR-519d |
acatttacCACTTTatgta |
1 |
CAAAGUGC | m6b | Created | -0.166000 | -0.109000 |
-0.090000 |
hsa-miR-526b-3p |
acatttacCACTTTatgta |
1 |
GAAAGUGC | m6b | Created | -0.166000 | -0.109000 | No effect |
hsa-miR-548ah-5p |
acatttacCACTTTatgta |
1 |
AAAAGUGA | m6b | Created | 0.009000 | 0.055000 |
-0.490000 |
hsa-miR-5590-3p |
acatttaccACTTTATgta |
0 | AAUAAAGU | m7b | (m6b->m7b) | no TS | 0.107000 |
-0.030000 |
hsa-miR-93-5p |
acatttacCACTTTatgta |
1 |
CAAAGUGC | m6b | Created | -0.155000 | -0.098000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.24545420G>A | COSN2157277 | RK001_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.24546167T>G | COSN1330074 | HX14T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-145-5p |
aaaatAACTGGACatagat |
5 |
GUCCAGUU | m8a | Created | -0.056000 | -0.175000 |
-0.300000 |
hsa-miR-198 |
aaaataaCTGGACatagat |
1 |
GGUCCAGA | m6b | Created | -0.205000 | -0.304000 |
-4.410000 |
hsa-miR-5195-3p |
aaaatAACTGGAcatagat |
5 |
AUCCAGUU | m7b | Created | -0.066000 | -0.166000 |
-4.680000 |
hsa-miR-935 |
aaaaTAACTGGacatagat |
1 |
CCAGUUAC | m7a | Created | -0.073000 | -0.073000 |
-0.010000 |
hsa-miR-145-5p |
aaaatAACTGGACatagat |
0 | GUCCAGUU | m8a | Created | -0.056 | -0.175 |
-0.3 |
hsa-miR-198 |
aaaataaCTGGACatagat |
0 | GGUCCAGA | m6b | Created | -0.205 | -0.304 |
-4.41 |
hsa-miR-5195-3p |
aaaatAACTGGAcatagat |
0 | AUCCAGUU | m7b | Created | -0.066 | -0.166 |
-4.68 |
hsa-miR-935 |
aaaaTAACTGGacatagat |
0 | CCAGUUAC | m7a | Created | -0.073 | -0.073 |
-0.01 |