SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001168374
Gene Symbol: KIAA0319
Description: Homo sapiens KIAA0319 (KIAA0319), transcript variant 3, mRNA.
Gene Location: chr6(-):24544331-24646383
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.24544863A>T COSN15439786 AOCS-088-1-0 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-34c-3p acagTAGTGATcagaaagt
 3
 AAUCACUA m7b Disrupted 0.017000 no TS 5.060000
hsa-miR-4539 acagtagtGTTCAGaaagt
 0 GCUGAACU m6b Created no TS -0.043000 -0.580000
hsa-miR-4762-3p acagtagtgATCAGAAagt
 2
 CUUCUGAU m7b (m7b->m6b) 0.010000 0.047000 3.350000
hsa-miR-34c-3p acagTAGTGATcagaaagt
 3
 AAUCACUA m7b Disrupted 0.017000 no TS 5.060000
hsa-miR-4539 acagtagtGTTCAGaaagt
 0 GCUGAACU m6b Created no TS -0.043000 -0.580000
hsa-miR-4762-3p acagtagtgATCAGAAagt
 2
 CUUCUGAU m7b (m7b->m6b) 0.010000 0.047000 3.350000


Mutation Mutation ID Sample Name Cancer Type
chr6:g.24545079A>G COSN14725587 CHC322T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr6:g.24545374G>A COSN6316676 RK128_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-106a-5p acatttacCACTTTatgta
 1
 AAAAGUGC m6b Created -0.155000 -0.098000 No effect
hsa-miR-142-5p acatttaccACTTTATGta
 0 CAUAAAGU m8a (m7a->m8a) no TS 0.117000 -0.200000
hsa-miR-17-5p acatttacCACTTTatgta
 1
 CAAAGUGC m6b Created -0.155000 -0.098000 No effect
hsa-miR-20b-5p acatttacCACTTTatgta
 1
 CAAAGUGC m6b Created -0.166000 -0.109000 No effect
hsa-miR-3609 acatttacCACTTTatgta
 1
 CAAAGUGA m6b Created 0.009000 0.059000 -0.330000
hsa-miR-4796-3p acatttaCCACTTTAtgta
 1
 UAAAGUGG m8a Created 0.002000 -0.046000 No effect
hsa-miR-518a-3p acatttacCGCTTTatgta
 0 GAAAGCGC m6b Disrupted -0.087000 no TS 0.210000
hsa-miR-518b acatttacCGCTTTatgta
 0 CAAAGCGC m6b Disrupted -0.087000 no TS 0.260000
hsa-miR-518c-3p acatttacCGCTTTatgta
 0 CAAAGCGC m6b Disrupted -0.087000 no TS 0.090000
hsa-miR-518d-3p acatttacCGCTTTatgta
 0 CAAAGCGC m6b Disrupted -0.087000 no TS 0.080000
hsa-miR-518f-3p acatttacCGCTTTatgta
 0 GAAAGCGC m6b Disrupted -0.087000 no TS 0.270000
hsa-miR-519d acatttacCACTTTatgta
 1
 CAAAGUGC m6b Created -0.166000 -0.109000 -0.090000
hsa-miR-526b-3p acatttacCACTTTatgta
 1
 GAAAGUGC m6b Created -0.166000 -0.109000 No effect
hsa-miR-548ah-5p acatttacCACTTTatgta
 1
 AAAAGUGA m6b Created 0.009000 0.055000 -0.490000
hsa-miR-5590-3p acatttaccACTTTATgta
 0 AAUAAAGU m7b (m6b->m7b) no TS 0.107000 -0.030000
hsa-miR-93-5p acatttacCACTTTatgta
 1
 CAAAGUGC m6b Created -0.155000 -0.098000 No effect


Mutation Mutation ID Sample Name Cancer Type
chr6:g.24545420G>A COSN2157277 RK001_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr6:g.24546167T>G COSN1330074 HX14T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-145-5p aaaatAACTGGACatagat
 5
 GUCCAGUU m8a Created -0.056000 -0.175000 -0.300000
hsa-miR-198 aaaataaCTGGACatagat
 1
 GGUCCAGA m6b Created -0.205000 -0.304000 -4.410000
hsa-miR-5195-3p aaaatAACTGGAcatagat
 5
 AUCCAGUU m7b Created -0.066000 -0.166000 -4.680000
hsa-miR-935 aaaaTAACTGGacatagat
 1
 CCAGUUAC m7a Created -0.073000 -0.073000 -0.010000
hsa-miR-145-5p aaaatAACTGGACatagat
 0 GUCCAGUU m8a Created -0.056 -0.175 -0.3
hsa-miR-198 aaaataaCTGGACatagat
 0 GGUCCAGA m6b Created -0.205 -0.304 -4.41
hsa-miR-5195-3p aaaatAACTGGAcatagat
 0 AUCCAGUU m7b Created -0.066 -0.166 -4.68
hsa-miR-935 aaaaTAACTGGacatagat
 0 CCAGUUAC m7a Created -0.073 -0.073 -0.01

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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