SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_005832
Gene Symbol: KCNMB2
Description: Homo sapiens potassium large conductance calcium-activated channel, subfamily M, beta member 2 (KCNMB2), transcript variant 2, mRNA.
Gene Location: chr3(+):178276617-178562217
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Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr3:g.178843129C>G COSN5041138 HCC52T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr3:g.178843179T>A 13_87 SJMB012_D Medulloblastoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3923 tactggaACTAGTactttc
 0 AACUAGUA m6b Disrupted -0.093 no TS No effect

Mutation Mutation ID Sample Name Cancer Type
chr3:g.178843282G>A COSN5041140 HCC162 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4773 ctgTGTTCTGagttgtcag
 13
 CAGAACAG m7a (m7a->m6a) -0.305000 -0.365000 0.200000
hsa-miR-589-3p ctgTGTTCTGAgttgtcag
 0 UCAGAACA m8a Disrupted -0.179000 no TS 2.120000
hsa-miR-4773 ctgTGTTCTGagttgtcag
 13
 CAGAACAG m7a (m7a->m6a) -0.305000 -0.365000 0.200000
hsa-miR-589-3p ctgTGTTCTGAgttgtcag
 0 UCAGAACA m8a Disrupted -0.179000 no TS 2.120000

Mutation Mutation ID Sample Name Cancer Type
chr3:g.178844013T>C COSN1933736 RK020_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3529-3p ttTTGTTGTTatattttat
 3
 AACAACAA m8a (m8a->m7a) -0.164000 -0.136000 -0.010000
hsa-miR-410 ttttgttGTTATATTttat
 8
 AAUAUAAC m8a Disrupted -0.106000 no TS 2.840000
hsa-miR-425-5p ttttgtTGTCATattttat
 1
 AAUGACAC m6b Created -0.088000 -0.187000 -3.950000
hsa-miR-4517 ttttgttgTCATATTTtat
 0 AAAUAUGA m8a Created no TS -0.098000 -0.090000
hsa-miR-3529-3p ttTTGTTGTTatattttat
 0 AACAACAA m8a (m8a->m7a) -0.164 -0.136 -0.01
hsa-miR-410 ttttgttGTTATATTttat
 8
 AAUAUAAC m8a Disrupted -0.106 no TS 2.84
hsa-miR-425-5p ttttgtTGTCATattttat
 0 AAUGACAC m6b Created -0.088 -0.187 -3.95
hsa-miR-4517 ttttgttgTCATATTTtat
 0 AAAUAUGA m8a Created no TS -0.098 -0.09

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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