SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_020647 |
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Gene Symbol: | JPH1 |
Description: | Homo sapiens junctophilin 1 (JPH1), mRNA. |
Gene Location: | chr8(-):75146938-75233562 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.74235760A>G | ICGC_sm253198 | RK051_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-302a-5p |
ttatTTTAAGTatgtgtct |
0 | ACUUAAAC | m7a | Created | NA | NA |
-4.01 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.74236944->TCAGAC | ICGC_ssm_v2_128715 | HX16T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1231 |
caggcagactCAGACACagggaaggaggc |
0 | GUGUCUGG | m7a | Disrupted | NA | NA |
-0.110000 |
hsa-miR-1914-5p |
caggcagactcagaCACAGGGaaggaggc |
0 | CCCUGUGC | m7a | (m7a->m6a) | NA | NA |
-0.520000 |
hsa-miR-4711-3p |
caggcagactcAGACACagggaaggaggc |
0 | CGUGUCUU | m6b | Disrupted | -0.201000 | -0.207000 |
-0.210000 |
hsa-miR-627 |
caggcagactcAGACTCAgacacagggaaggaggc |
0 | GUGAGUCU | m7b | Created | -0.071000 | -0.181000 |
-0.380000 |
hsa-miR-632 |
caggcagactCAGACACagggaaggaggc |
0 | GUGUCUGC | m7a | Disrupted | NA | NA |
1.190000 |
hsa-miR-924 |
caggcagactcAGACTCagacacagggaaggaggc |
0 | AGAGUCUU | m6b | Created | -0.085000 | -0.194000 |
-0.230000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
74236943 | rs200885369 | - | - |
hsa-miR-339-5p hsa-miR-4711-3p |
5 12 |
cagactcagacACAGGGAaggag cagactcAGACACAgggaaggag |
Unknown Unknown |
N N |
-0.001 0.006 |
TCAGAC |
hsa-miR-4682 hsa-miR-627-5p hsa-miR-924 |
4 12 12 |
cagactcagACTCAGAcacagggaaggag cagactcAGACTCAgacacagggaaggag cagactcAGACTCAgacacagggaaggag |
Unknown Unknown Unknown |
N N N |
-0.107 -0.11 -0.109 |