SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_020647
Gene Symbol: JPH1
Description: Homo sapiens junctophilin 1 (JPH1), mRNA.
Gene Location: chr8(-):75146938-75233562
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr8:g.74235760A>G ICGC_sm253198 RK051_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-302a-5p ttatTTTAAGTatgtgtct
0 ACUUAAAC m7a Created NA NA -4.01

Mutation Mutation ID Sample Name Cancer Type
chr8:g.74236944->TCAGAC ICGC_ssm_v2_128715 HX16T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1231 caggcagactCAGACACagggaaggaggc
0 GUGUCUGG m7a Disrupted NA NA -0.110000
hsa-miR-1914-5p caggcagactcagaCACAGGGaaggaggc
0 CCCUGUGC m7a (m7a->m6a) NA NA -0.520000
hsa-miR-4711-3p caggcagactcAGACACagggaaggaggc
0 CGUGUCUU m6b Disrupted -0.201000 -0.207000 -0.210000
hsa-miR-627 caggcagactcAGACTCAgacacagggaaggaggc
0 GUGAGUCU m7b Created -0.071000 -0.181000 -0.380000
hsa-miR-632 caggcagactCAGACACagggaaggaggc
0 GUGUCUGC m7a Disrupted NA NA 1.190000
hsa-miR-924 caggcagactcAGACTCagacacagggaaggaggc
0 AGAGUCUU m6b Created -0.085000 -0.194000 -0.230000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
74236943 rs200885369 - - hsa-miR-339-5p
hsa-miR-4711-3p
5
12
cagactcagacACAGGGAaggag
cagactcAGACACAgggaaggag
Unknown
Unknown
N
N
-0.001
0.006
TCAGAC hsa-miR-4682
hsa-miR-627-5p
hsa-miR-924
4
12
12
cagactcagACTCAGAcacagggaaggag
cagactcAGACTCAgacacagggaaggag
cagactcAGACTCAgacacagggaaggag
Unknown
Unknown
Unknown
N
N
N
-0.107
-0.11
-0.109

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