SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_004973
Gene Symbol: JARID2
Description: Homo sapiens jumonji, AT rich interactive domain 2 (JARID2), mRNA.
Gene Location: chr6(+):15246526-15522253
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.15520447A>G COSN1327395 HX17T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-17-3p agatACTGCAGTcagattt
 17
 ACUGCAGU m8a Disrupted -0.224000 no TS 0.910000
hsa-miR-3136-5p agatactgCAGTCAGattt
 10
 CUGACUGA m7a Disrupted -0.330000 -0.330000 0.580000
hsa-miR-345-5p agatactgcAGTCAGattt
 11
 GCUGACUC m6b Disrupted -0.135000 no TS No effect
hsa-miR-4256 agatactgcGGTCAGATtt
 0 AUCUGACC m8a (m7b->m8a) no TS -0.220000 -1.290000
hsa-miR-4418 agataCTGCAGTcagattt
 17
 CACUGCAG m7b Disrupted -0.323000 -0.092000 1.180000
hsa-miR-509-3-5p agataCTGCAGTcagattt
 17
 UACUGCAG m7b Disrupted -0.323000 -0.092000 0.050000
hsa-miR-509-5p agataCTGCAGTcagattt
 17
 UACUGCAG m7b Disrupted -0.351000 -0.120000 0.020000
hsa-miR-943 agatactgCAGTCAGattt
 3
 CUGACUGU m7a Disrupted -0.368000 -0.368000 1.360000
hsa-miR-17-3p agatACTGCAGTcagattt
 17
 ACUGCAGU m8a Disrupted -0.224000 no TS 0.910000
hsa-miR-3136-5p agatactgCAGTCAGattt
 10
 CUGACUGA m7a Disrupted -0.330000 -0.330000 0.580000
hsa-miR-345-5p agatactgcAGTCAGattt
 11
 GCUGACUC m6b Disrupted -0.135000 no TS No effect
hsa-miR-4256 agatactgcGGTCAGATtt
 0 AUCUGACC m8a (m7b->m8a) no TS -0.220000 -1.290000
hsa-miR-4418 agataCTGCAGTcagattt
 17
 CACUGCAG m7b Disrupted -0.323000 -0.092000 1.180000
hsa-miR-509-3-5p agataCTGCAGTcagattt
 17
 UACUGCAG m7b Disrupted -0.323000 -0.092000 0.050000
hsa-miR-509-5p agataCTGCAGTcagattt
 17
 UACUGCAG m7b Disrupted -0.351000 -0.120000 0.020000
hsa-miR-943 agatactgCAGTCAGattt
 3
 CUGACUGU m7a Disrupted -0.368000 -0.368000 1.360000
hsa-miR-17-3p agatACTGCAGTcagattt
 17
 ACUGCAGU m8a Disrupted -0.224 no TS 0.91
hsa-miR-3136-5p agatactgCAGTCAGattt
 0 CUGACUGA m7a Disrupted -0.33 -0.33 0.58
hsa-miR-345-5p agatactgcAGTCAGattt
 0 GCUGACUC m6b Disrupted -0.135 no TS No effect
hsa-miR-4256 agatactgcGGTCAGATtt
 0 AUCUGACC m8a (m7b->m8a) no TS -0.22 -1.29
hsa-miR-4418 agataCTGCAGTcagattt
 17
 CACUGCAG m7b Disrupted -0.323 -0.092 1.18
hsa-miR-509-3-5p agataCTGCAGTcagattt
 17
 UACUGCAG m7b Disrupted -0.323 -0.092 0.05
hsa-miR-509-5p agataCTGCAGTcagattt
 17
 UACUGCAG m7b Disrupted -0.351 -0.12 0.02
hsa-miR-943 agatactgCAGTCAGattt
 0 CUGACUGU m7a Disrupted -0.368 -0.368 -0.64

Mutation Mutation ID Sample Name Cancer Type
chr6:g.15521093G>A COSN6513181 HX18T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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