SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001079818 |
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Gene Symbol: | ITGA6 |
Description: | Homo sapiens integrin, alpha 6 (ITGA6), transcript variant 2, mRNA. |
Gene Location: | chr2(+):173292313-173371181 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.172504511C>T | COSN6154609 | RK308_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-449b-3p |
tatttttggTGTGGCTGac |
0 | CAGCCACA | m8a | (m7b->m8a) | no TS | -0.152000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.172506170T>G | COSN9866734 | C0100T | [kidney][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1260a |
ataaaaGTGGGAaataaat |
0 | AUCCCACC | m6b | Created | no TS | -0.207000 |
-4.080000 |
hsa-miR-1260b |
ataaaaGTGGGAaataaat |
0 | AUCCCACC | m6b | Created | no TS | -0.207000 | No effect |
hsa-miR-188-3p |
ataaaaGTGGGAaataaat |
0 | CUCCCACA | m6b | Created | no TS | -0.199000 |
-4.710000 |
hsa-miR-205-3p |
ataaaagtgTGAAATaaat |
15 |
GAUUUCAG | m6b | Disrupted | -0.027000 | no TS | No effect |
hsa-miR-3156-3p |
ataaaAGTGGGAaataaat |
0 | CUCCCACU | m7b | Created | no TS | -0.489000 |
-7.860000 |
hsa-miR-377-3p |
ataaaaGTGTGAaataaat |
10 |
AUCACACA | m6b | Disrupted | -0.345000 | -0.178000 | No effect |
hsa-miR-4301 |
ataaaAGTGGGAaataaat |
0 | UCCCACUA | m7a | Created | no TS | -0.225000 |
-1.920000 |
hsa-miR-4446-5p |
ataaaagtGGGAAATaaat |
0 | AUUUCCCU | m7a | Created | NA | NA |
-7.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.172506205G>A | COSN15041785 | LP6007422-DNA_A01 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |