SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_002163
Gene Symbol: IRF8
Description: Homo sapiens interferon regulatory factor 8 (IRF8), mRNA.
Gene Location: chr16(+):85932773-85956211
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr16:g.85921560A>G COSN7157403 8057714 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-15b-3p ttagttgctATGATTCttt
0 CGAAUCAU m7b (m7b->m6c) -0.140000 no TS 0.070000
hsa-miR-3120-3p ttagTTGCTGTGattcttt
4
CACAGCAA m8a Created -0.072000 -0.215000 -2.470000

Mutation Mutation ID Sample Name Cancer Type
chr16:g.85922309G>A COSN4767981 tumor_4102009 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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